ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7496432	uncharacterized LOC7496432
ppo-r.4	7496432	uncharacterized LOC7496432
ppo-m.4	7496432	uncharacterized LOC7496432
ppo-u.5	7464522	uncharacterized LOC7464522
gma-u.5	100795537	uncharacterized LOC100795537
gma-u.5	100792159	uncharacterized LOC100792159
mtr-u.5	11430812	uncharacterized LOC11430812
ath-u.5	AT5G53620	RNA polymerase II degradation factor
bra-r.6	103857070	cingulin
vvi-u.5	100252015	uncharacterized LOC100252015
ghi-r.1	107955218	uncharacterized LOC107955218
ghi-r.1	107947196	uncharacterized LOC107947196
ghi-r.1	107930270	interaptin
bna-r.1	125591246	uncharacterized LOC125591246
bna-r.1	106441686	cingulin
bna-r.1	106387465	restin homolog
cit-r.1	102631129	uncharacterized LOC102631129
sly-u.5	101246515	uncharacterized LOC101246515
sot-r.1	102581741	uncharacterized LOC102581741
nta-r.1	107789253	uncharacterized LOC107789253
nta-r.1	107761715	uncharacterized LOC107761715
osa-u.5	4346207	uncharacterized LOC4346207
zma-u.5	100383560	uncharacterized LOC100383560
zma-u.5	100384829	uncharacterized LOC100384829
tae-r.2	123152260	uncharacterized LOC123152260
tae-r.2	123162764	uncharacterized LOC123162764
tae-r.2	123169798	uncharacterized LOC123169798
hvu-r.1	123412578	uncharacterized LOC123412578
sbi-r.1	8060899	uncharacterized LOC8060899
bdi-r.1	100831359	uncharacterized LOC100831359

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_002318464.3 [sequence] [blastp]
XP_024438087.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 1, mito 1, chlo_mito 1, cyto 1, plas 1, cysk 1, golg 1, cyto_mito 1, golg_plas 1, cysk_plas 1, cyto_plas 1	(predict for XP_002318464.3)
nucl 4, chlo 1, mito 1, chlo_mito 1, cyto 1, plas 1, cysk 1, golg 1, cyto_mito 1, golg_plas 1, cysk_plas 1, cyto_plas 1	(predict for XP_024438087.2)

Subcellular
localization
TargetP

other 4, mito 4	(predict for XP_002318464.3)
other 4, mito 4	(predict for XP_024438087.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7496432	ppo-r.4 for 7496432	ppo-m.4 for 7496432	ppo-u.5 for 7464522	gma-u.5 for 100795537	gma-u.5 for 100792159	mtr-u.5 for 11430812	ath-u.5 for AT5G53620	bra-r.6 for 103857070	vvi-u.5 for 100252015	ghi-r.1 for 107955218	ghi-r.1 for 107947196	ghi-r.1 for 107930270	bna-r.1 for 125591246	bna-r.1 for 106441686	bna-r.1 for 106387465	cit-r.1 for 102631129	sly-u.5 for 101246515	sot-r.1 for 102581741	nta-r.1 for 107789253	nta-r.1 for 107761715	osa-u.5 for 4346207	zma-u.5 for 100383560	zma-u.5 for 100384829	tae-r.2 for 123152260	tae-r.2 for 123162764	tae-r.2 for 123169798	hvu-r.1 for 123412578	sbi-r.1 for 8060899	bdi-r.1 for 100831359

Ortholog

Ortholog ID: 6996

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7496432

uncharacterized LOC7464522

uncharacterized LOC100795537

uncharacterized LOC100792159

uncharacterized LOC11430812

RNA polymerase II degradation factor

cingulin

uncharacterized LOC100252015

uncharacterized LOC107955218

interaptin

uncharacterized LOC107890790

uncharacterized LOC125591246

restin homolog

uncharacterized LOC102631129

uncharacterized LOC101246515

uncharacterized LOC102581741

uncharacterized LOC107789253

uncharacterized LOC107761715

uncharacterized LOC4346207

uncharacterized LOC100383560

uncharacterized LOC100384829

uncharacterized LOC123152260

uncharacterized LOC123162764

uncharacterized LOC123169798

uncharacterized LOC123412578

uncharacterized LOC8060899

uncharacterized LOC100831359

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03083	Polycomb repressive complex	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma04517	IgSF CAM signaling	2
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr04144	Endocytosis	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03013	Nucleocytoplasmic transport	3
ath03410	Base excision repair	2
ath00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	3
bra03040	Spliceosome	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	4
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta00220	Arginine biosynthesis	3
nta00240	Pyrimidine metabolism	3
nta00250	Alanine, aspartate and glutamate metabolism	3
nta01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta00220	Arginine biosynthesis	3
nta00240	Pyrimidine metabolism	3
nta00250	Alanine, aspartate and glutamate metabolism	3
nta01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03018	RNA degradation	3
zma00970	Aminoacyl-tRNA biosynthesis	3
zma03015	mRNA surveillance pathway	3
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2
zma05100	Bacterial invasion of epithelial cells	2
zma03013	Nucleocytoplasmic transport	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae00514	Other types of O-glycan biosynthesis	3
tae03083	Polycomb repressive complex	3
tae00970	Aminoacyl-tRNA biosynthesis	2
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae00514	Other types of O-glycan biosynthesis	2
tae03083	Polycomb repressive complex	2
tae00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2
hvu04382	Cornified envelope formation	2
hvu03018	RNA degradation	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	4
sbi03083	Polycomb repressive complex	2
sbi04382	Cornified envelope formation	2
sbi03013	Nucleocytoplasmic transport	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03013	Nucleocytoplasmic transport	3

Expression

Expression pattern

Entrez Gene ID^*

7496432

7464522

100795537

100792159

11430812

835444

103857070

100252015

107955218

107930270

107890790

125591246

106387465

102631129

101246515

102581741

107789253

107761715

4346207

100383560

100384829

123152260

123162764

123169798

123412578

8060899

100831359

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7496432 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7496432 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	1	1	1	3	3	1	1	1	2	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7496432 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7496432 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**