ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7498185	uncharacterized LOC7498185
ppo-r.4	7498185	uncharacterized LOC7498185
ppo-m.4	7498185	uncharacterized LOC7498185
ppo-u.5	7481559	uncharacterized LOC7481559
gma-u.5	100806318	uncharacterized LOC100806318
gma-u.5	100786542	uncharacterized LOC100786542
mtr-u.5	11415311	uncharacterized LOC11415311
mtr-u.5	112421785	uncharacterized LOC112421785
ath-u.5	AT1G26740	Ribosomal L32p protein family
bra-r.6	103840641	uncharacterized LOC103840641
bra-r.6	103829200	uncharacterized LOC103829200
vvi-u.5	100264586	uncharacterized LOC100264586
ghi-r.1	121232029	uncharacterized LOC121232029
ghi-r.1	121219296	uncharacterized LOC121219296
bna-r.1	125576495	uncharacterized LOC125576495
bna-r.1	111200285	uncharacterized LOC111200285
bna-r.1	BNAC07G12420D	uncharacterized BNAC07G12420D
cit-r.1	102630866	uncharacterized LOC102630866
sly-u.5	101261920	uncharacterized LOC101261920
sly-u.5	101248964	uncharacterized LOC101248964
sot-r.1	102591198	uncharacterized LOC102591198
sot-r.1	102589553	uncharacterized LOC102589553
nta-r.1	107788202	uncharacterized LOC107788202
nta-r.1	107788772	uncharacterized LOC107788772
nta-r.1	107808367	uncharacterized LOC107808367
osa-u.5	4331759	uncharacterized LOC4331759
osa-u.5	4348590	uncharacterized LOC4348590
zma-u.5	100282289	uncharacterized LOC100282289
zma-u.5	100282208	uncharacterized LOC100282208
tae-r.2	123084785	uncharacterized LOC123084785
tae-r.2	123093299	uncharacterized LOC123093299
tae-r.2	123098570	uncharacterized LOC123098570
hvu-r.1	123449549	uncharacterized LOC123449549
sbi-r.1	8059824	uncharacterized LOC8059824
bdi-r.1	100827106	uncharacterized LOC100827106

Top 50 coexpressed genes to 7498185 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7498185 (ppo-u.5 coexpression data)

CoexMap"7498185"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03010 [list] [network] Ribosome (698 genes)

GO BP

GO:0006412 [list] [network] translation

(598 genes)

IEA

GO CC

GO:0005762 [list] [network] mitochondrial large ribosomal subunit

(24 genes)

IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(439 genes)

IEA

Protein

XP_002311319.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 4, chlo_mito 4

(predict for XP_002311319.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_002311319.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7498185	ppo-r.4 for 7498185	ppo-m.4 for 7498185	ppo-u.5 for 7481559	gma-u.5 for 100806318	gma-u.5 for 100786542	mtr-u.5 for 11415311	mtr-u.5 for 112421785	ath-u.5 for AT1G26740	bra-r.6 for 103840641	bra-r.6 for 103829200	vvi-u.5 for 100264586	ghi-r.1 for 121232029	ghi-r.1 for 121219296	bna-r.1 for 125576495	bna-r.1 for 111200285	bna-r.1 for BNAC07G12420D	cit-r.1 for 102630866	sly-u.5 for 101261920	sly-u.5 for 101248964	sot-r.1 for 102591198	sot-r.1 for 102589553	nta-r.1 for 107788202	nta-r.1 for 107788772	nta-r.1 for 107808367	osa-u.5 for 4331759	osa-u.5 for 4348590	zma-u.5 for 100282289	zma-u.5 for 100282208	tae-r.2 for 123084785	tae-r.2 for 123093299	tae-r.2 for 123098570	hvu-r.1 for 123449549	sbi-r.1 for 8059824	bdi-r.1 for 100827106

Ortholog

Ortholog ID: 5415

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7498185

uncharacterized LOC7481559

uncharacterized LOC100806318

uncharacterized LOC100786542

ribosomal protein L32-like

uncharacterized LOC11415311

uncharacterized LOC112421785

Ribosomal L32p protein family

uncharacterized LOC103840641

uncharacterized LOC103829200

uncharacterized LOC100264586

uncharacterized LOC121232029

uncharacterized LOC121219296

uncharacterized LOC125576495

uncharacterized LOC111200285

uncharacterized BNACNNG33200D

uncharacterized LOC102630866

uncharacterized LOC101261920

uncharacterized LOC101248964

uncharacterized LOC102591198

uncharacterized LOC102589553

uncharacterized LOC107788202

uncharacterized LOC107788772

uncharacterized LOC107808367

uncharacterized LOC4331759

uncharacterized LOC4348590

uncharacterized LOC100282289

uncharacterized LOC100282208

uncharacterized LOC123084785

uncharacterized LOC123093299

uncharacterized LOC123098570

uncharacterized LOC123449549

uncharacterized LOC8059824

uncharacterized LOC100827106

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	6
gma00220	Arginine biosynthesis	4
gma00190	Oxidative phosphorylation	3
gma03010	Ribosome	2
gma01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	11
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	3
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	3
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	13
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	12
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta03040	Spliceosome	2
nta03018	RNA degradation	2
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	6
osa03010	Ribosome	3
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15
tae04120	Ubiquitin mediated proteolysis	4
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	16
tae04120	Ubiquitin mediated proteolysis	4
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	17

Expression

Expression pattern

Entrez Gene ID^*

7498185

7481559

100806318

100786542

100779998

11415311

112421785

839215

103840641

103829200

100264586

121232029

121219296

125576495

111200285

106367492

102630866

101261920

101248964

102591198

102589553

107788202

107788772

107808367

4331759

4348590

100282289

100282208

123084785

123093299

123098570

123449549

8059824

100827106

The preparation time of this page was 0.5 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	1	2	1	2	3	1	2	2	3	2	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7498185 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7498185 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**