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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-m.5  LCA1  Ca2+-ATPase 
 sly-u.5  LCA1  Ca2+-ATPase 
 sly-r.6  LCA1  Ca2+-ATPase 
 sly-u.5  101257236  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 sly-u.5  101256303  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 sot-r.1  102591952  calcium-transporting ATPase, endoplasmic reticulum-type 
 sot-r.1  102595434  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 sot-r.1  102605714  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 nta-r.1  107814435  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 nta-r.1  107807149  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 nta-r.1  107801276  calcium-transporting ATPase, endoplasmic reticulum-type 
 ath-u.5  ECA2  ER-type Ca2+-ATPase 2 
 ath-u.5  ECA4  endomembrane-type CA-ATPase 4 
 ath-u.5  ECA1  ER-type Ca2+-ATPase 1 
 gma-u.5  100788807  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 gma-u.5  100792952  calcium-transporting ATPase, endoplasmic reticulum-type 
 gma-u.5  100800498  calcium-transporting ATPase, endoplasmic reticulum-type 
 bra-r.6  103871788  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 bra-r.6  103843530  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 vvi-u.5  100243325  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 vvi-u.5  100266003  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 vvi-u.5  100253574  calcium-transporting ATPase, endoplasmic reticulum-type 
 ppo-u.5  7488861  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 ppo-u.5  7488148  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 ppo-u.5  7472652  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 mtr-u.5  25489978  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 mtr-u.5  11439860  calcium-transporting ATPase, endoplasmic reticulum-type 
 mtr-u.5  11420948  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 ghi-r.1  107905259  calcium-transporting ATPase 1, endoplasmic reticulum-type 
 ghi-r.1  107885955  calcium-transporting ATPase 1, endoplasmic reticulum-type 
 ghi-r.1  107924450  calcium-transporting ATPase, endoplasmic reticulum-type 
 bna-r.1  106419983  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 bna-r.1  106400566  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 bna-r.1  106416370  calcium-transporting ATPase 3, endoplasmic reticulum-type-like 
 cit-r.1  127900968  calcium-transporting ATPase, endoplasmic reticulum-type-like 
 cit-r.1  102610538  calcium-transporting ATPase, endoplasmic reticulum-type 
 cit-r.1  102611583  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 osa-u.5  4333998  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 osa-u.5  4337647  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 osa-u.5  4332447  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 zma-u.5  100192002  uncharacterized LOC100192002 
 zma-u.5  103639290  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 zma-u.5  103635958  uncharacterized LOC103635958 
 tae-r.2  123095998  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 tae-r.2  123086989  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 tae-r.2  123085497  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 hvu-r.1  123447668  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 hvu-r.1  123448975  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 hvu-r.1  123449823  calcium-transporting ATPase 4, endoplasmic reticulum-type-like 
 sbi-r.1  8060530  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 sbi-r.1  8067356  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 sbi-r.1  8084900  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 bdi-r.1  100840411  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 bdi-r.1  100844515  calcium-transporting ATPase 3, endoplasmic reticulum-type 
 bdi-r.1  100845328  calcium-transporting ATPase 4, endoplasmic reticulum-type 
 cre-r.1  CHLRE_11g467795v5  uncharacterized protein 
 cre-r.1  CHLRE_05g242350v5  uncharacterized protein 

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Top 50 coexpressed genes to LCA1 (sly-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LCA1 (sly-m.5 coexpression data)

CoexMap"543554"


slyLCA1 | Entrez gene ID : 543554
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 5 3 3 3 3 2 3 3 3 3 3 3 3 3 3 3 3 3 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006874 [list] [network] intracellular calcium ion homeostasis  (30 genes)  IEA  
GO:0070588 [list] [network] calcium ion transmembrane transport  (43 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3085 genes)  IEA  
GO MF
GO:0005388 [list] [network] P-type calcium transporter activity  (16 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (408 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein NP_001234073.1 [sequence] [blastp]
XP_010323817.1 [sequence] [blastp]
XP_010323824.1 [sequence] [blastp]
XP_010323830.1 [sequence] [blastp]
XP_025888877.1 [sequence] [blastp]
XP_069143841.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  E.R. 1,  golg 1  (predict for NP_001234073.1)
plas 6,  E.R. 1,  golg 1  (predict for XP_010323817.1)
plas 6,  E.R. 1,  golg 1  (predict for XP_010323824.1)
plas 6,  E.R. 1,  golg 1  (predict for XP_010323830.1)
plas 6,  E.R. 1,  golg 1  (predict for XP_025888877.1)
plas 6,  E.R. 1,  golg 1  (predict for XP_069143841.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001234073.1)
other 9  (predict for XP_010323817.1)
other 9  (predict for XP_010323824.1)
other 9  (predict for XP_010323830.1)
other 9  (predict for XP_025888877.1)
other 9  (predict for XP_069143841.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sly-m.5
for
LCA1


sly-u.5
for
LCA1


sly-r.6
for
LCA1


sly-u.5
for
101257236


sly-u.5
for
101256303


sot-r.1
for
102591952


sot-r.1
for
102595434


sot-r.1
for
102605714


nta-r.1
for
107814435


nta-r.1
for
107807149


nta-r.1
for
107801276


ath-u.5
for
ECA2


ath-u.5
for
ECA4


ath-u.5
for
ECA1


gma-u.5
for
100788807


gma-u.5
for
100792952


gma-u.5
for
100800498


bra-r.6
for
103871788


bra-r.6
for
103843530


vvi-u.5
for
100243325


vvi-u.5
for
100266003


vvi-u.5
for
100253574


ppo-u.5
for
7488861


ppo-u.5
for
7488148


ppo-u.5
for
7472652


mtr-u.5
for
25489978


mtr-u.5
for
11439860


mtr-u.5
for
11420948


ghi-r.1
for
107905259


ghi-r.1
for
107885955


ghi-r.1
for
107924450


bna-r.1
for
106419983


bna-r.1
for
106400566


bna-r.1
for
106416370


cit-r.1
for
127900968


cit-r.1
for
102610538


cit-r.1
for
102611583


osa-u.5
for
4333998


osa-u.5
for
4337647


osa-u.5
for
4332447


zma-u.5
for
100192002


zma-u.5
for
103639290


zma-u.5
for
103635958


tae-r.2
for
123095998


tae-r.2
for
123086989


tae-r.2
for
123085497


hvu-r.1
for
123447668


hvu-r.1
for
123448975


hvu-r.1
for
123449823


sbi-r.1
for
8060530


sbi-r.1
for
8067356


sbi-r.1
for
8084900


bdi-r.1
for
100840411


bdi-r.1
for
100844515


bdi-r.1
for
100845328


cre-r.1
for
CHLRE_11g467795v5


cre-r.1
for
CHLRE_05g242350v5



Ortholog ID: 1022
Species sly sly sly sot sot sot nta nta nta ath ath ath gma gma gma bra bra vvi vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna cit cit cit osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre cre
Symbol LCA1 LOC101257236 LOC101256303 LOC102591952 LOC102595434 LOC102605714 LOC107814435 LOC107799945 LOC107817505 ECA2 ECA4 ECA3 LOC100788807 LOC100792952 LOC100812151 LOC103871788 LOC103836850 LOC100243325 LOC100266003 LOC100248326 LOC7488861 LOC7472652 LOC7486789 LOC25489978 LOC11439860 LOC11420948 LOC107932929 LOC107952973 LOC107954443 LOC106419983 LOC106419981 LOC106350609 LOC127900968 LOC102610538 LOC102611583 LOC4333998 LOC4337647 LOC4332447 LOC100192002 LOC103635958 LOC103643958 LOC123090984 LOC123092543 LOC123180083 LOC123447668 LOC123448975 LOC123449823 LOC8060530 LOC8067356 LOC8084900 LOC100840411 LOC100844515 LOC100845328 CHLRE_11g467795v5 CHLRE_05g242350v5
Function* Ca2+-ATPase calcium-transporting ATPase 4, endoplasmic reticulum-type-like calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type-like calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type-like ER-type Ca2+-ATPase 2 endomembrane-type CA-ATPase 4 endoplasmic reticulum-type calcium-transporting ATPase 3 calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type calcium-transporting ATPase 1, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 2, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 1, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type-like calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase, endoplasmic reticulum-type-like calcium-transporting ATPase, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type-like calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type uncharacterized LOC100192002 uncharacterized LOC103635958 calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type-like calcium-transporting ATPase 4, endoplasmic reticulum-type-like calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type calcium-transporting ATPase 3, endoplasmic reticulum-type calcium-transporting ATPase 4, endoplasmic reticulum-type uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 4
sot04144 Endocytosis 3
sot05100 Bacterial invasion of epithelial cells 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 6
ath01230 Biosynthesis of amino acids 6
ath00010 Glycolysis / Gluconeogenesis 5
ath00710 Carbon fixation by Calvin cycle 3
ath00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 15
ath04145 Phagosome 5
ath03060 Protein export 3
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 8
ath00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00020 Citrate cycle (TCA cycle) 2
gma00785 Lipoic acid metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00520 Amino sugar and nucleotide sugar metabolism 2
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 7
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00410 beta-Alanine metabolism 2
vvi00640 Propanoate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo04142 Lysosome 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 6
ppo03250 Viral life cycle - HIV-1 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04626 Plant-pathogen interaction 3
ppo03040 Spliceosome 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03018 RNA degradation 2
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 7
zma00190 Oxidative phosphorylation 5
zma04145 Phagosome 5
zma00630 Glyoxylate and dicarboxylate metabolism 4
zma00071 Fatty acid degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 6
tae03018 RNA degradation 3
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 10
hvu03060 Protein export 3
hvu04144 Endocytosis 3
hvu04145 Phagosome 3
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04148 Efferocytosis 2
sbi04517 IgSF CAM signaling 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi04120 Ubiquitin mediated proteolysis 2
sbi04142 Lysosome 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 3
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 4
bdi04144 Endocytosis 3
bdi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 9
cre03018 RNA degradation 2
cre03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 543554 101257236 101256303 102591952 102595434 102605714 107814435 107799945 107817505 827984 837280 837550 100788807 100792952 100812151 103871788 103836850 100243325 100266003 100248326 7488861 7472652 7486789 25489978 11439860 11420948 107932929 107952973 107954443 106419983 106419981 106350609 127900968 102610538 102611583 4333998 4337647 4332447 100192002 103635958 103643958 123090984 123092543 123180083 123447668 123448975 123449823 8060530 8067356 8084900 100840411 100844515 100845328 5725079 5726453
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