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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-m.5   NSY   lycopene beta-cyclase, chromoplastic 
 sly-u.5   NSY   lycopene beta-cyclase, chromoplastic 
 sly-r.6   NSY   lycopene beta-cyclase, chromoplastic 
 sot-r.1   102601215   neoxanthin synthase, chloroplastic 
 nta-r.1   107784989   neoxanthin synthase, chloroplastic-like 
 nta-r.1   107802057   neoxanthin synthase, chloroplastic 
 gma-u.5   100795360   capsanthin/capsorubin synthase, chromoplastic 
 vvi-u.5   100246737   capsanthin/capsorubin synthase, chromoplast 
 ppo-u.5   7478577   capsanthin/capsorubin synthase, chromoplastic 
 ppo-u.5   18098070   capsanthin/capsorubin synthase, chromoplastic 
 mtr-u.5   11408134   capsanthin/capsorubin synthase, chromoplastic 
 mtr-u.5   11417046   neoxanthin synthase, chloroplastic 
 ghi-r.1   107889184   capsanthin/capsorubin synthase, chromoplastic 
 ghi-r.1   107892904   capsanthin/capsorubin synthase, chromoplastic 
 cit-r.1   102625209   capsanthin/capsorubin synthase, chromoplastic-like 

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Top 50 coexpressed genes to NSY (sly-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NSY (sly-m.5 coexpression data)

CoexMap"543649"


slyNSY | Entrez gene ID : 543649      
Species sly sot nta gma vvi ppo mtr ghi cit cre bra ath hvu bna tae bdi osa zma sbi
Paralog 3 1 2 1 1 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00906 [list] [network] Carotenoid biosynthesis (39 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (16 genes)  IEA  
GO CC
GO MF
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (432 genes)  IEA  
Protein NP_001234445.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001234445.2)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001234445.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-m.5
for
NSY
sly-u.5
for
NSY
sly-r.6
for
NSY
sot-r.1
for
102601215
nta-r.1
for
107784989
nta-r.1
for
107802057
gma-u.5
for
100795360
vvi-u.5
for
100246737
ppo-u.5
for
7478577
ppo-u.5
for
18098070
mtr-u.5
for
11408134
mtr-u.5
for
11417046
ghi-r.1
for
107889184
ghi-r.1
for
107892904
cit-r.1
for
102625209


Ortholog ID: 14233
Species sly sot nta nta gma vvi ppo ppo mtr mtr ghi ghi cit
Symbol NSY LOC102601215 LOC107784989 LOC107802057 LOC100795360 LOC100246737 LOC7478577 LOC18098070 LOC11408134 LOC11417046 LOC107889184 LOC107892904 LOC102625209
Function* lycopene beta-cyclase, chromoplastic neoxanthin synthase, chloroplastic neoxanthin synthase, chloroplastic-like neoxanthin synthase, chloroplastic capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplast capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic neoxanthin synthase, chloroplastic capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00940 Phenylpropanoid biosynthesis 2
gma00380 Tryptophan metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 9
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00310 Lysine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 543649 102601215 107784989 107802057 100795360 100246737 7478577 18098070 11408134 11417046 107889184 107892904 102625209
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