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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-m.5   CAB4   chlorophyll a/b-binding protein precursor 
 sly-u.5   CAB4   chlorophyll a/b-binding protein precursor 
 sly-r.6   CAB4   chlorophyll a/b-binding protein precursor 
 sly-u.5   Cab-3C   chlorophyll a/b-binding protein Cab-3C 
 sly-u.5   101267774   chlorophyll a-b binding protein 1-like 
 ath-u.5   CAB1   chlorophyll A/B binding protein 1 
 ath-u.5   CAB2   chlorophyll A/B-binding protein 2 
 ath-u.5   CAB3   chlorophyll A/B binding protein 3 
 gma-u.5   100805310   chlorophyll a-b binding protein 3, chloroplastic-like 
 gma-u.5   100815789   chlorophyll a-b binding protein 
 gma-u.5   LHCB1-7   photosystem II type I chlorophyll a/b-binding protein 
 vvi-u.5   100254533   chlorophyll a-b binding protein 151, chloroplastic-like 
 vvi-u.5   100252066   chlorophyll a-b binding protein of LHCII type 1 
 vvi-u.5   100241745   chlorophyll a-b binding protein of LHCII type 1 
 ppo-u.5   7493970   chlorophyll a-b binding protein of LHCII type 1 
 ppo-u.5   7493971   chlorophyll a-b binding protein of LHCII type 1 
 ppo-u.5   7471832   chlorophyll a-b binding protein of LHCII type 1 
 mtr-u.5   11414909   chlorophyll a-b binding protein of LHCII type 1 
 mtr-u.5   11427672   chlorophyll a-b binding protein of LHCII type 1 
 mtr-u.5   25493394   chlorophyll a-b binding protein AB80, chloroplastic 
 osa-u.5   4346803   chlorophyll a-b binding protein 1, chloroplastic-like 
 osa-u.5   4333359   chlorophyll a-b binding protein, chloroplastic-like 
 osa-u.5   4324705   chlorophyll a-b binding protein 2, chloroplastic-like 
 zma-u.5   100193833   light harvesting complex mesophyll 7 
 zma-u.5   100282054   chlorophyll a-b binding protein 2 
 zma-u.5   100281879   chlorophyll a-b binding protein 

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Top 50 coexpressed genes to CAB4 (sly-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CAB4 (sly-m.5 coexpression data)

CoexMap"543975"


slyCAB4 | Entrez gene ID : 543975      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00196 [list] [network] Photosynthesis - antenna proteins (29 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (29 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (118 genes)  IEA  
GO CC
GO:0010287 [list] [network] plastoglobule  (20 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (117 genes)  IEA  
GO:0009941 [list] [network] chloroplast envelope  (118 genes)  IEA  
GO MF
Protein NP_001234739.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 7,  chlo 1,  cyto 1,  mito 1,  E.R. 1,  chlo_mito 1,  cyto_E.R. 1  (predict for NP_001234739.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001234739.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-m.5
for
CAB4

.
sly-u.5
for
CAB4

.
sly-r.6
for
CAB4

.
sly-u.5
for
Cab-3C

.
sly-u.5
for
101267774

.
ath-u.5
for
CAB1

.
ath-u.5
for
CAB2

.
ath-u.5
for
CAB3

.
gma-u.5
for
100805310

.
gma-u.5
for
100815789

.
gma-u.5
for
LHCB1-7

.
vvi-u.5
for
100254533

.
vvi-u.5
for
100252066

.
vvi-u.5
for
100241745

.
ppo-u.5
for
7493970

.
ppo-u.5
for
7493971

.
ppo-u.5
for
7471832

.
mtr-u.5
for
11414909

.
mtr-u.5
for
11427672

.
mtr-u.5
for
25493394

.
osa-u.5
for
4346803

.
osa-u.5
for
4333359

.
osa-u.5
for
4324705

.
zma-u.5
for
100193833

.
zma-u.5
for
100282054

.
zma-u.5
for
100281879

.


Ortholog ID: 151
Species ath gma gma sly osa osa zma zma vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta
Symbol LHB1B1 CAB3 LOC100799813 LOC101245729 LOC4333359 LOC4324705 LOC103643653 LOC100274453 LOC100254533 LOC100241745 LOC7489858 LOC7493970 LOC25495304 LOC25495305 LOC123068673 LOC123175700 LOC123412762 LOC123412763 LOC107954948 LOC107913771 LOC106405647 LOC106432786 CHLRE_12g548400v5 CHLRE_12g548950v5 LOC8062994 LOC8082204 LOC102594074 LOC102604320 LOC102625299 LOC102610533 LOC104583754 LOC100828241 LOC142169108
Function* light-harvesting chlorophyll-protein complex II subunit B1 chlorophyll a/b-binding protein chlorophyll a-b binding protein of LHCII type 1 chlorophyll a/b-binding protein chlorophyll a-b binding protein, chloroplastic-like chlorophyll a-b binding protein 2, chloroplastic-like chlorophyll a-b binding protein, chloroplastic light harvesting chlorophyll a/b binding protein1 chlorophyll a-b binding protein 151, chloroplastic-like chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein 5, chloroplastic chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein, chloroplastic-like chlorophyll a-b binding protein of LHCII type 1-like chlorophyll a-b binding protein of LHCII type 1-like chlorophyll a-b binding protein of LHCII type 1-like chlorophyll a-b binding protein 151, chloroplastic chlorophyll a-b binding protein of LHCII type 1-like chlorophyll a-b binding protein 1, chloroplastic chlorophyll a-b binding protein 1, chloroplastic uncharacterized protein uncharacterized protein chlorophyll a-b binding protein 5, chloroplastic chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 3C, chloroplastic-like chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein 151, chloroplastic chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein of LHCII type 1 chlorophyll a-b binding protein 50, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 13
ath00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 12
osa00195 Photosynthesis 4
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 8
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 15
zma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 18
zma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 14
vvi00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 9
vvi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 8
ppo00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 12
ppo00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 7
mtr00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 11
hvu00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 6
ghi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 12
ghi00195 Photosynthesis 4
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 9
cre00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 10
sbi00195 Photosynthesis 3
sbi00710 Carbon fixation by Calvin cycle 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 13
sbi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 16
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 6
cit00195 Photosynthesis 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 9
cit00195 Photosynthesis 5
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 10
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 21
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818006 547862 100799813 101245729 4333359 4324705 103643653 100274453 100254533 100241745 7489858 7493970 25495304 25495305 123068673 123175700 123412762 123412763 107954948 107913771 106405647 106432786 5719625 5719633 8062994 8082204 102594074 102604320 102625299 102610533 104583754 100828241 142169108
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