ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-r.6	101247238	mediator of RNA polymerase II transcription subunit 30
sly-u.5	101247238	mediator of RNA polymerase II transcription subunit 30
sly-m.5	101247238	mediator of RNA polymerase II transcription subunit 30
sot-r.1	102589254	mediator of RNA polymerase II transcription subunit 30
nta-r.1	107769730	mediator of RNA polymerase II transcription subunit 30-like
nta-r.1	107785835	mediator of RNA polymerase II transcription subunit 30
ath-u.5	AT5G63480	mediator of RNA polymerase II transcription subunit
gma-u.5	100816835	mediator of RNA polymerase II transcription subunit 30
gma-u.5	100788627	mediator of RNA polymerase II transcription subunit 30
bra-r.6	103837473	mediator of RNA polymerase II transcription subunit 30
vvi-u.5	100264705	mediator of RNA polymerase II transcription subunit 30
ppo-u.5	7454564	mediator of RNA polymerase II transcription subunit 30
ppo-u.5	7454727	mediator of RNA polymerase II transcription subunit 30
mtr-u.5	11434561	mediator of RNA polymerase II transcription subunit 30
ghi-r.1	121219314	mediator of RNA polymerase II transcription subunit 30
ghi-r.1	121232044	mediator of RNA polymerase II transcription subunit 30
ghi-r.1	121226753	mediator of RNA polymerase II transcription subunit 30
bna-r.1	106348394	mediator of RNA polymerase II transcription subunit 30
cit-r.1	102618213	mediator of RNA polymerase II transcription subunit 30
osa-u.5	9271345	mediator of RNA polymerase II transcription subunit 30
zma-u.5	100384016	Mediator of RNA polymerase II transcription subunit 30
zma-u.5	100279078	Mediator of RNA polymerase II transcription subunit 30
tae-r.2	123189056	mediator of RNA polymerase II transcription subunit 30
tae-r.2	123053144	mediator of RNA polymerase II transcription subunit 30
tae-r.2	123045308	mediator of RNA polymerase II transcription subunit 30
hvu-r.1	123426541	mediator of RNA polymerase II transcription subunit 30
sbi-r.1	8070965	mediator of RNA polymerase II transcription subunit 30
bdi-r.1	100837441	mediator of RNA polymerase II transcription subunit 30
bdi-r.1	100826158	mediator of RNA polymerase II transcription subunit 30

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0016592 [list] [network] mediator complex

(47 genes)

IEA

GO MF

Protein

XP_004244509.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, nucl_plas 4, cyto 1, mito 1, plas 1, chlo 1, extr 1, cyto_mito 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_004244509.1)

Subcellular
localization
TargetP

other 9

(predict for XP_004244509.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-r.6 for 101247238	sly-u.5 for 101247238	sly-m.5 for 101247238	sot-r.1 for 102589254	nta-r.1 for 107769730	nta-r.1 for 107785835	ath-u.5 for AT5G63480	gma-u.5 for 100816835	gma-u.5 for 100788627	bra-r.6 for 103837473	vvi-u.5 for 100264705	ppo-u.5 for 7454564	ppo-u.5 for 7454727	mtr-u.5 for 11434561	ghi-r.1 for 121219314	ghi-r.1 for 121232044	ghi-r.1 for 121226753	bna-r.1 for 106348394	cit-r.1 for 102618213	osa-u.5 for 9271345	zma-u.5 for 100384016	zma-u.5 for 100279078	tae-r.2 for 123189056	tae-r.2 for 123053144	tae-r.2 for 123045308	hvu-r.1 for 123426541	sbi-r.1 for 8070965	bdi-r.1 for 100837441	bdi-r.1 for 100826158

Ortholog

Ortholog ID: 7395

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

mediator of RNA polymerase II transcription subunit 30

mediator of RNA polymerase II transcription subunit 30-like

mediator of RNA polymerase II transcription subunit 30

mediator of RNA polymerase II transcription subunit

mediator of RNA polymerase II transcription subunit 30

Mediator of RNA polymerase II transcription subunit 30

mediator of RNA polymerase II transcription subunit 30

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03083	Polycomb repressive complex	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	6
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi04382	Cornified envelope formation	6
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	4
bna03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	4
bna03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03020	RNA polymerase	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	2
tae00790	Folate biosynthesis	2
tae01240	Biosynthesis of cofactors	2
tae04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04144	Endocytosis	2
bdi03022	Basal transcription factors	2

Expression

Expression pattern

Entrez Gene ID^*

101247238

102589254

107769730

107785835

836467

100816835

100788627

103837473

100264705

7454564

7454727

11434561

121219314

121232044

121226753

106348394

106347914

102618213

9271345

100384016

100279078

123189056

123053144

123045308

123426541

8070965

100837441

100826158

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101247238 (sly-r.6 coexpression data)

Top 50 enrichment test to 101247238 (sly-r.6 coexpression data)


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	2	1	2	1	1	2	1	3	1	1	1	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101247238 (sly-r.6 coexpression data)

Top 50 enrichment test to 101247238 (sly-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**