ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-r.6	TPM-1	osmotin-like protein OSML13
sly-u.5	TPM-1	osmotin-like protein OSML13
sly-m.5	TPM-1	osmotin-like protein OSML13
sly-u.5	101261172	thaumatin-like protein 1
sly-u.5	101262166	thaumatin-like protein 1
sly-u.5	101264452	osmotin-like protein OSML13
sot-r.1	102591283	thaumatin-like protein 1
sot-r.1	102590933	thaumatin-like protein 1b
nta-r.1	107769944	thaumatin-like protein
nta-r.1	107776518	pathogenesis-related protein R major form
ath-u.5	TLP-3	thaumatin-like protein 3
ath-u.5	AT1G75800	Pathogenesis-related thaumatin superfamily protein
gma-u.5	100802906	thaumatin-like protein 1
gma-u.5	OLPa	osmotin-like protein, acidic
bra-r.6	103844371	thaumatin-like protein 1b
vvi-u.5	100249610	thaumatin-like protein
ppo-u.5	18094931	thaumatin-like protein 1
ppo-u.5	7490640	thaumatin-like protein 1b
ppo-u.5	7479328	osmotin-like protein OSM34
mtr-u.5	11437395	thaumatin-like protein 1b
mtr-u.5	25502021	protein P21
ghi-r.1	107921001	thaumatin-like protein 1
ghi-r.1	107910709	thaumatin-like protein 1
ghi-r.1	107912027	thaumatin-like protein 1
bna-r.1	106361535	thaumatin-like protein 1
bna-r.1	106357688	thaumatin-like protein 1
cit-r.1	102578041	thaumatin-like protein
cit-r.1	102607823	thaumatin-like protein 1b
osa-u.5	4352857	protein P21
osa-u.5	4333634	alpha-amylase/trypsin inhibitor
zma-u.5	103626019	protein P21
zma-u.5	542299	stress-induced protein 1
zma-u.5	100192090	putative thaumatin domain family protein
tae-r.2	123106356	protein P21
hvu-r.1	123411366	thaumatin-like protein 1
hvu-r.1	123446857	thaumatin-like protein 1b
sbi-r.1	8066008	thaumatin-like protein 1b
sbi-r.1	8063315	thaumatin-like protein 1b
bdi-r.1	100841264	thaumatin-like protein 1
bdi-r.1	100844611	thaumatin-like protein 1

Top 50 coexpressed genes to TPM-1 (sly-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to TPM-1 (sly-r.6 coexpression data)

CoexMap"544082"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006952 [list] [network] defense response

(358 genes)

IEA

GO CC

GO:0005576 [list] [network] extracellular region

(261 genes)

IEA

GO MF

Protein

NP_001296216.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, extr 3, vacu 2, chlo_mito 2

(predict for NP_001296216.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_001296216.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-r.6 for TPM-1	sly-u.5 for TPM-1	sly-m.5 for TPM-1	sly-u.5 for 101261172	sly-u.5 for 101262166	sly-u.5 for 101264452	sot-r.1 for 102591283	sot-r.1 for 102590933	nta-r.1 for 107769944	nta-r.1 for 107776518	ath-u.5 for TLP-3	ath-u.5 for AT1G75800	gma-u.5 for 100802906	gma-u.5 for OLPa	bra-r.6 for 103844371	vvi-u.5 for 100249610	ppo-u.5 for 18094931	ppo-u.5 for 7490640	ppo-u.5 for 7479328	mtr-u.5 for 11437395	mtr-u.5 for 25502021	ghi-r.1 for 107921001	ghi-r.1 for 107910709	ghi-r.1 for 107912027	bna-r.1 for 106361535	bna-r.1 for 106357688	cit-r.1 for 102578041	cit-r.1 for 102607823	osa-u.5 for 4352857	osa-u.5 for 4333634	zma-u.5 for 103626019	zma-u.5 for 542299	zma-u.5 for 100192090	tae-r.2 for 123106356	hvu-r.1 for 123411366	hvu-r.1 for 123446857	sbi-r.1 for 8066008	sbi-r.1 for 8063315	bdi-r.1 for 100841264	bdi-r.1 for 100844611

Ortholog

Ortholog ID: 30

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

TLP-3

Function^*

thaumatin-like protein

pathogenesis-related thaumatin-like protein 3.5

osmotin-like protein OSML81

pathogenesis-related protein R major form

protein P21

pathogenesis-related thaumatin-like protein 3.5

thaumatin-like protein 3

Pathogenesis-related thaumatin superfamily protein

thaumatin-like protein 1

thaumatin-like protein 1b

thaumatin-like protein 1

thaumatin-like protein

thaumatin-like protein 1b

thaumatin-like protein

thaumatin-like protein 1b

osmotin-like protein OSM34

thaumatin-like protein 1

protein P21

thaumatin-like protein 1

thaumatin-like protein 1b

protein P21

thaumatin-like protein

pathogenesis-related protein 5-like

thaumatin-like protein 1

protein P21-like

thaumatin-like protein 1b

thaumatin-like protein 1

protein P21

Protein P21

putative thaumatin domain family protein

thaumatin-like protein 1

pathogenesis-related 5 protein Cup a 3-like

thaumatin-like protein 1b

thaumatin-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	3
sly04142	Lysosome	3
sly04145	Phagosome	3
sly04144	Endocytosis	2
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	3
sot04075	Plant hormone signal transduction	3
sot04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	8
nta04626	Plant-pathogen interaction	7
nta04075	Plant hormone signal transduction	6
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00904	Diterpenoid biosynthesis	2
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	4
vvi04626	Plant-pathogen interaction	4
vvi00520	Amino sugar and nucleotide sugar metabolism	3
vvi00480	Glutathione metabolism	3
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00909	Sesquiterpenoid and triterpenoid biosynthesis	5
vvi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	4
ppo00480	Glutathione metabolism	3
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo04075	Plant hormone signal transduction	2
ppo00901	Indole alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	3
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma04075	Plant hormone signal transduction	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04016	MAPK signaling pathway - plant	6
hvu04075	Plant hormone signal transduction	5
hvu04626	Plant-pathogen interaction	5

Expression

Expression pattern

Entrez Gene ID^*

104645134

101261870

102585092

102594304

107776518

107805712

107807243

843841

829757

100815652

103844371

103860762

100249610

100264253

100259841

7490640

7479328

7470389

11436800

25492788

25492789

107947008

121203468

106449414

106355231

102621968

102622492

102622795

4347700

103626019

100281135

100274734

123160584

123395625

8078857

100841264

The preparation time of this page was 4.5 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	2	2	2	2	1	1	3	2	3	2	2	2	3	1	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TPM-1 (sly-r.6 coexpression data)

Top 50 enrichment test to TPM-1 (sly-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**