ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	BBR/BPC5	GAGA-binding transcriptional activator
sly-r.6	BBR/BPC5	GAGA-binding transcriptional activator
sly-u.5	BBR/BPC1	GAGA-binding transcriptional activator
sot-r.1	BBR/BPC1	protein BASIC PENTACYSTEINE2-like
sot-r.1	102593241	protein BASIC PENTACYSTEINE2-like
nta-r.1	107817801	protein BASIC PENTACYSTEINE2-like
nta-r.1	107808957	protein BASIC PENTACYSTEINE2-like
nta-r.1	107800183	protein BASIC PENTACYSTEINE2-like
ath-u.5	BPC1	basic pentacysteine1
ath-u.5	BPC2	basic pentacysteine 2
gma-u.5	GBP	GAGA-binding protein
gma-u.5	100800718	protein BASIC PENTACYSTEINE2
gma-u.5	100791533	protein BASIC PENTACYSTEINE2
bra-r.6	103836058	protein BASIC PENTACYSTEINE2
bra-r.6	103872265	protein BASIC PENTACYSTEINE2
bra-r.6	103842953	protein BASIC PENTACYSTEINE2
vvi-u.5	100233138	GAGA-binding transcriptional activator BBR/BPC1-like
vvi-u.5	BBR/BPC2	protein BASIC PENTACYSTEINE1-like
ppo-u.5	7471447	protein BASIC PENTACYSTEINE2
ppo-u.5	112323524	protein BASIC PENTACYSTEINE2
mtr-u.5	120575876	protein BASIC PENTACYSTEINE1
mtr-u.5	120577634	protein BASIC PENTACYSTEINE2
ghi-r.1	107922313	protein BASIC PENTACYSTEINE2
ghi-r.1	107898750	protein BASIC PENTACYSTEINE1
ghi-r.1	107898748	protein BASIC PENTACYSTEINE2
bna-r.1	106434643	protein BASIC PENTACYSTEINE2-like
bna-r.1	106346606	protein BASIC PENTACYSTEINE2
bna-r.1	106382321	protein BASIC PENTACYSTEINE2
cit-r.1	102616365	protein BASIC PENTACYSTEINE2-like
osa-u.5	9268674	barley B recombinant-like protein A
osa-u.5	4347983	barley B recombinant-like protein A
osa-u.5	4347984	barley B recombinant-like protein C
zma-u.5	100285904	uncharacterized LOC100285904
zma-u.5	100191172	uncharacterized LOC100191172
zma-u.5	100283491	uncharacterized LOC100283491
tae-r.2	123085222	protein Barley B recombinant
tae-r.2	123092837	protein Barley B recombinant
tae-r.2	123098124	protein Barley B recombinant
hvu-r.1	123449207	protein Barley B recombinant
sbi-r.1	8057324	protein Barley B recombinant
sbi-r.1	8057326	protein Barley B recombinant
sbi-r.1	8076161	protein Barley B recombinant
bdi-r.1	100846221	barley B recombinant-like protein A
bdi-r.1	100846523	barley B recombinant-like protein A

Top 50 coexpressed genes to BBR/BPC5 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to BBR/BPC5 (sly-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

GAGA-binding transcriptional activator

KEGG

GO BP

GO:0009723 [list] [network] response to ethylene

(85 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(778 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1125 genes)	IEA

Protein

NP_001266122.1 [sequence] [blastp]
NP_001294856.1 [sequence] [blastp]
XP_010322309.1 [sequence] [blastp]
XP_010322311.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for NP_001266122.1)
nucl 5, chlo 3, cyto_nucl 3, nucl_plas 3	(predict for NP_001294856.1)
nucl 10	(predict for XP_010322309.1)
nucl 10	(predict for XP_010322311.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001266122.1)
other 6	(predict for NP_001294856.1)
other 7	(predict for XP_010322309.1)
other 7	(predict for XP_010322311.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for BBR/BPC5	sly-r.6 for BBR/BPC5	sly-u.5 for BBR/BPC1	sot-r.1 for BBR/BPC1	sot-r.1 for 102593241	nta-r.1 for 107817801	nta-r.1 for 107808957	nta-r.1 for 107800183	ath-u.5 for BPC1	ath-u.5 for BPC2	gma-u.5 for GBP	gma-u.5 for 100800718	gma-u.5 for 100791533	bra-r.6 for 103836058	bra-r.6 for 103872265	bra-r.6 for 103842953	vvi-u.5 for 100233138	vvi-u.5 for BBR/BPC2	ppo-u.5 for 7471447	ppo-u.5 for 112323524	mtr-u.5 for 120575876	mtr-u.5 for 120577634	ghi-r.1 for 107922313	ghi-r.1 for 107898750	ghi-r.1 for 107898748	bna-r.1 for 106434643	bna-r.1 for 106346606	bna-r.1 for 106382321	cit-r.1 for 102616365	osa-u.5 for 9268674	osa-u.5 for 4347983	osa-u.5 for 4347984	zma-u.5 for 100285904	zma-u.5 for 100191172	zma-u.5 for 100283491	tae-r.2 for 123085222	tae-r.2 for 123092837	tae-r.2 for 123098124	hvu-r.1 for 123449207	sbi-r.1 for 8057324	sbi-r.1 for 8057326	sbi-r.1 for 8076161	bdi-r.1 for 100846221	bdi-r.1 for 100846523

Please wait a moment.

Ortholog

Ortholog ID: 2254

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

BPC1

BPC2

GBP

Function^*

GAGA-binding transcriptional activator

protein BASIC PENTACYSTEINE2-like

basic pentacysteine1

basic pentacysteine 2

GAGA-binding protein

protein BASIC PENTACYSTEINE2

uncharacterized LOC100814354

protein BASIC PENTACYSTEINE2

GAGA-binding transcriptional activator BBR/BPC1-like

protein BASIC PENTACYSTEINE1-like

protein BASIC PENTACYSTEINE2

protein BASIC PENTACYSTEINE1

protein BASIC PENTACYSTEINE2

protein BASIC PENTACYSTEINE1

protein BASIC PENTACYSTEINE2

protein BASIC PENTACYSTEINE2-like

barley B recombinant-like protein A

barley B recombinant-like protein C

uncharacterized LOC100285904

uncharacterized LOC100191172

uncharacterized LOC100283491

protein Barley B recombinant

barley B recombinant-like protein A

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly04136	Autophagy - other	2
sly04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot04136	Autophagy - other	4
sot04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	3
nta00730	Thiamine metabolism	2
nta00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	4
vvi04141	Protein processing in endoplasmic reticulum	3
vvi03013	Nucleocytoplasmic transport	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03013	Nucleocytoplasmic transport	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	3
ppo04144	Endocytosis	3
ppo04016	MAPK signaling pathway - plant	2
ppo04070	Phosphatidylinositol signaling system	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	6
mtr04120	Ubiquitin mediated proteolysis	2
mtr03082	ATP-dependent chromatin remodeling	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	3
cit04075	Plant hormone signal transduction	3
cit03040	Spliceosome	2
cit03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	4
osa04145	Phagosome	3
osa04517	IgSF CAM signaling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00770	Pantothenate and CoA biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae00053	Ascorbate and aldarate metabolism	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01240	Biosynthesis of cofactors	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04517	IgSF CAM signaling	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

101055564

101055562

102595573

102593241

107817801

107800183

107792698

814724

838031

606296

100783209

100814354

103836058

103872265

103842953

100233138

100255909

7471447

7459089

7485186

120575876

120577634

107934525

121228305

107909954

106434643

106431061

102616365

9268674

4347983

4347984

100285904

100191172

100283491

123085222

123092837

123098124

123449207

8057324

8057326

8076161

100846221

100846523

The preparation time of this page was 0.4 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	3	2	3	3	2	2	2	3	3	1	3	3	3	1	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to BBR/BPC5 (sly-u.5 coexpression data)

Top 50 enrichment test to BBR/BPC5 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**