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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101248743   pentatricopeptide repeat-containing protein At4g21065 
 sly-r.6   101248743   pentatricopeptide repeat-containing protein At4g21065 
 sot-r.1   102592913   pentatricopeptide repeat-containing protein At4g21065-like 
 nta-r.1   107798268   pentatricopeptide repeat-containing protein At5g66520-like 
 nta-r.1   107832176   pentatricopeptide repeat-containing protein At5g66520-like 
 gma-u.5   100802052   pentatricopeptide repeat-containing protein 
 gma-u.5   100815249   pentatricopeptide repeat-containing protein At4g21065 
 vvi-u.5   100262445   pentatricopeptide repeat-containing protein At4g21065 
 mtr-u.5   11413102   pentatricopeptide repeat-containing protein At4g21065 

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Top 50 coexpressed genes to 101248743 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101248743 (sly-u.5 coexpression data)

CoexMap""


slyLOC101248743 | Entrez gene ID : 101248743      
Species sly sot nta gma vvi mtr tae bdi cit hvu ath osa sbi zma bra ghi cre bna ppo
Paralog 2 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide repeat-containing protein At4g21065
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004251020.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 2,  cysk 2,  chlo_mito 2  (predict for XP_004251020.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_004251020.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101248743
sly-r.6
for
101248743
sot-r.1
for
102592913
nta-r.1
for
107798268
nta-r.1
for
107832176
gma-u.5
for
100802052
gma-u.5
for
100815249
vvi-u.5
for
100262445
mtr-u.5
for
11413102

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Ortholog ID: 17785
Species sly sot nta nta gma gma vvi mtr
Symbol LOC101248743 LOC102592913 LOC107798268 LOC107832176 LOC100802052 LOC100815249 LOC100262445 LOC11413102
Function* pentatricopeptide repeat-containing protein At4g21065 pentatricopeptide repeat-containing protein At4g21065-like pentatricopeptide repeat-containing protein At5g66520-like pentatricopeptide repeat-containing protein At5g66520-like pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g21065 pentatricopeptide repeat-containing protein At4g21065 pentatricopeptide repeat-containing protein At4g21065
Coexmap

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Coexpression

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KEGG Info
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101248743 102592913 107798268 107832176 100802052 100815249 100262445 11413102
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