ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101250883	uncharacterized LOC101250883
sly-r.6	101250883	uncharacterized LOC101250883
sly-m.5	101250883	uncharacterized LOC101250883
sly-u.5	101249553	uncharacterized LOC101249553
sly-u.5	101247846	uncharacterized LOC101247846
sly-u.5	101248502	uncharacterized LOC101248502
sot-r.1	102596179	uncharacterized LOC102596179
sot-r.1	102603678	uncharacterized LOC102603678
sot-r.1	102586365	uncharacterized LOC102586365
nta-r.1	107802771	uncharacterized LOC107802771
nta-r.1	107791984	uncharacterized LOC107791984
nta-r.1	107790789	uncharacterized LOC107790789
ath-u.5	AT3G07565	histone H2A deubiquitinase (DUF3755)
ath-u.5	AT1G10820	hypothetical protein (DUF3755)
gma-u.5	100796928	uncharacterized LOC100796928
gma-u.5	100795518	uncharacterized LOC100795518
gma-u.5	100785197	uncharacterized LOC100785197
bra-r.6	103858071	uncharacterized LOC103858071
bra-r.6	103868072	uncharacterized LOC103868072
vvi-u.5	100257710	uncharacterized LOC100257710
vvi-u.5	100852665	uncharacterized LOC100852665
vvi-u.5	100261483	uncharacterized LOC100261483
ppo-u.5	7459067	uncharacterized LOC7459067
ppo-u.5	7471473	uncharacterized LOC7471473
ppo-u.5	18106849	uncharacterized LOC18106849
mtr-u.5	25482727	uncharacterized LOC25482727
mtr-u.5	25487913	uncharacterized LOC25487913
ghi-r.1	107914640	uncharacterized LOC107914640
ghi-r.1	107923171	uncharacterized LOC107923171
ghi-r.1	107920411	uncharacterized LOC107920411
bna-r.1	106354001	uncharacterized LOC106354001
bna-r.1	106357936	uncharacterized LOC106357936
cit-r.1	102617437	uncharacterized LOC102617437
cit-r.1	102612668	uncharacterized LOC102612668
cit-r.1	102620128	uncharacterized LOC102620128
osa-u.5	4344413	uncharacterized LOC4344413
osa-u.5	4337371	uncharacterized LOC4337371
osa-u.5	4336435	uncharacterized LOC4336435
zma-u.5	100192021	uncharacterized LOC100192021
zma-u.5	100275345	uncharacterized LOC100275345
zma-u.5	100382732	uncharacterized LOC100382732
tae-r.2	123190996	uncharacterized LOC123190996
tae-r.2	123189861	uncharacterized LOC123189861
tae-r.2	123047342	uncharacterized LOC123047342
hvu-r.1	123427117	homeobox protein Hox-B3-like
hvu-r.1	123401168	uncharacterized LOC123401168
hvu-r.1	123410737	uncharacterized LOC123410737
sbi-r.1	8060197	uncharacterized LOC8060197
sbi-r.1	8064311	uncharacterized LOC8064311
sbi-r.1	8070311	uncharacterized LOC8070311
bdi-r.1	100843315	uncharacterized LOC100843315
bdi-r.1	100843322	uncharacterized LOC100843322
bdi-r.1	100845515	uncharacterized LOC100845515
cre-r.1	CHLRE_03g170400v5	uncharacterized protein

Top 50 coexpressed genes to 101250883 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101250883 (sly-u.5 coexpression data)

CoexMap"101250883"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_004236884.1 [sequence] [blastp]
XP_010319356.1 [sequence] [blastp]
XP_010319357.1 [sequence] [blastp]
XP_010319358.1 [sequence] [blastp]
XP_010319359.1 [sequence] [blastp]
XP_010319360.1 [sequence] [blastp]
XP_069153044.1 [sequence] [blastp]
XP_069153045.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_004236884.1)
nucl 10	(predict for XP_010319356.1)
nucl 10	(predict for XP_010319357.1)
nucl 10	(predict for XP_010319358.1)
nucl 10	(predict for XP_010319359.1)
nucl 9, cyto 1, cysk 1	(predict for XP_010319360.1)
nucl 9, cyto 1, cysk 1	(predict for XP_069153044.1)
nucl 9	(predict for XP_069153045.1)

Subcellular
localization
TargetP

chlo 3	(predict for XP_004236884.1)
chlo 3	(predict for XP_010319356.1)
chlo 3	(predict for XP_010319357.1)
chlo 3	(predict for XP_010319358.1)
chlo 3	(predict for XP_010319359.1)
chlo 3	(predict for XP_010319360.1)
chlo 3	(predict for XP_069153044.1)
chlo 3	(predict for XP_069153045.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101250883	sly-r.6 for 101250883	sly-m.5 for 101250883	sly-u.5 for 101249553	sly-u.5 for 101247846	sly-u.5 for 101248502	sot-r.1 for 102596179	sot-r.1 for 102603678	sot-r.1 for 102586365	nta-r.1 for 107802771	nta-r.1 for 107791984	nta-r.1 for 107790789	ath-u.5 for AT3G07565	ath-u.5 for AT1G10820	gma-u.5 for 100796928	gma-u.5 for 100795518	gma-u.5 for 100785197	bra-r.6 for 103858071	bra-r.6 for 103868072	vvi-u.5 for 100257710	vvi-u.5 for 100852665	vvi-u.5 for 100261483	ppo-u.5 for 7459067	ppo-u.5 for 7471473	ppo-u.5 for 18106849	mtr-u.5 for 25482727	mtr-u.5 for 25487913	ghi-r.1 for 107914640	ghi-r.1 for 107923171	ghi-r.1 for 107920411	bna-r.1 for 106354001	bna-r.1 for 106357936	cit-r.1 for 102617437	cit-r.1 for 102612668	cit-r.1 for 102620128	osa-u.5 for 4344413	osa-u.5 for 4337371	osa-u.5 for 4336435	zma-u.5 for 100192021	zma-u.5 for 100275345	zma-u.5 for 100382732	tae-r.2 for 123190996	tae-r.2 for 123189861	tae-r.2 for 123047342	hvu-r.1 for 123427117	hvu-r.1 for 123401168	hvu-r.1 for 123410737	sbi-r.1 for 8060197	sbi-r.1 for 8064311	sbi-r.1 for 8070311	bdi-r.1 for 100843315	bdi-r.1 for 100843322	bdi-r.1 for 100845515	cre-r.1 for CHLRE_03g170400v5

Ortholog

Ortholog ID: 425

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

FSB1

Function^*

uncharacterized LOC101250883

uncharacterized LOC101249553

fruit SANT/MYB Binding protein1

uncharacterized LOC102596179

uncharacterized LOC102603678

putative uncharacterized protein DDB_G0287265

uncharacterized LOC107791984

uncharacterized LOC107784298

uncharacterized LOC107807001

hypothetical protein (DUF3755)

ZZ-type zinc finger protein, putative (DUF3755)

uncharacterized LOC100796928

uncharacterized LOC100775443

uncharacterized LOC103859231

uncharacterized LOC103849243

uncharacterized LOC103838499

uncharacterized LOC100257710

uncharacterized LOC100261483

uncharacterized LOC100249209

uncharacterized LOC7471473

uncharacterized LOC7469359

uncharacterized LOC7469578

uncharacterized LOC25487913

uncharacterized LOC25492813

uncharacterized LOC107886350

uncharacterized LOC107913494

uncharacterized LOC121216013

uncharacterized LOC106402604

uncharacterized LOC106402057

uncharacterized LOC106389002

uncharacterized LOC102617437

uncharacterized LOC102612668

uncharacterized LOC102620128

uncharacterized LOC4344413

uncharacterized LOC4336435

uncharacterized LOC4330057

uncharacterized LOC100192021

uncharacterized LOC100382732

uncharacterized LOC100276256

homeobox protein Hox-B3

uncharacterized LOC123137551

uncharacterized LOC123055146

homeobox protein Hox-B3-like

uncharacterized LOC123410737

uncharacterized LOC123428388

uncharacterized LOC8060197

uncharacterized LOC8064311

uncharacterized LOC110434662

uncharacterized LOC100843315

uncharacterized LOC100843322

uncharacterized LOC100846119

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03420	Nucleotide excision repair	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2
mtr03013	Nucleocytoplasmic transport	2
mtr03040	Spliceosome	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	3
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04142	Lysosome	2
cit04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3
tae00920	Sulfur metabolism	3
tae01200	Carbon metabolism	3
tae01230	Biosynthesis of amino acids	3
tae01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

101250883

101249553

101268497

102596179

102603678

102595898

107791984

107784298

107807001

842361

843144

100796928

100775443

103859231

103849243

103838499

100257710

100261483

100249209

7471473

7469359

7469578

25487913

25492813

107886350

107913494

121216013

106402604

106402057

106389002

102617437

102612668

102620128

4344413

4336435

4330057

100192021

100382732

100276256

123045890

123137551

123055146

123427117

123410737

123428388

8060197

8064311

110434662

100843315

100843322

100846119

66052827

The preparation time of this page was 0.2 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	2	3	2	3	3	2	3	2	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101250883 (sly-u.5 coexpression data)

Top 50 enrichment test to 101250883 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**