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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123046458   CCR4-NOT transcription complex subunit 9 
 tae-r.2   123054307   CCR4-NOT transcription complex subunit 9 
 tae-r.2   123190192   CCR4-NOT transcription complex subunit 9 
 tae-r.2   123105303   CCR4-NOT transcription complex subunit 9 
 hvu-r.1   123427622   CCR4-NOT transcription complex subunit 9-like 
 hvu-r.1   123431497   CCR4-NOT transcription complex subunit 9-like 
 hvu-r.1   123452562   CCR4-NOT transcription complex subunit 9-like 
 bdi-r.1   100841771   CCR4-NOT transcription complex subunit 9 
 bdi-r.1   100837139   cell differentiation protein rcd1 
 osa-u.5   9272009   uncharacterized LOC9272009 
 zma-u.5   100193338   uncharacterized LOC100193338 
 sbi-r.1   8072335   CCR4-NOT transcription complex subunit 9 
 ath-u.5   AT3G20800   Cell differentiation, Rcd1-like protein 
 ath-u.5   AT5G12980   Cell differentiation, Rcd1-like protein 
 gma-u.5   100801266   CCR4-NOT transcription complex subunit 9 
 gma-u.5   100792784   CCR4-NOT transcription complex subunit 9 
 gma-u.5   100784529   CCR4-NOT transcription complex subunit 9 
 sly-u.5   101260874   uncharacterized LOC101260874 
 sly-u.5   101265516   uncharacterized LOC101265516 
 sly-u.5   101263473   uncharacterized LOC101263473 
 bra-r.6   103855988   CCR4-NOT transcription complex subunit 9 
 bra-r.6   103869276   CCR4-NOT transcription complex subunit 9 
 bra-r.6   103835726   CCR4-NOT transcription complex subunit 9 
 vvi-u.5   100265941   uncharacterized LOC100265941 
 ppo-u.5   7470819   uncharacterized LOC7470819 
 ppo-u.5   7483613   uncharacterized LOC7483613 
 mtr-u.5   25488987   CCR4-NOT transcription complex subunit 9 
 ghi-r.1   107963045   CCR4-NOT transcription complex subunit 9 
 ghi-r.1   107945315   CCR4-NOT transcription complex subunit 9 
 ghi-r.1   107889925   CCR4-NOT transcription complex subunit 9 
 bna-r.1   106454713   CCR4-NOT transcription complex subunit 9 
 bna-r.1   125603095   CCR4-NOT transcription complex subunit 9-like 
 bna-r.1   106451861   CCR4-NOT transcription complex subunit 9 
 sot-r.1   102595126   cell differentiation protein RCD1 homolog 
 sot-r.1   102586245   cell differentiation protein RCD1 homolog 
 sot-r.1   102596009   cell differentiation protein RCD1 homolog 
 cit-r.1   102618037   uncharacterized LOC102618037 
 nta-r.1   107807908   uncharacterized LOC107807908 
 nta-r.1   107783900   uncharacterized LOC107783900 
 nta-r.1   107769964   uncharacterized LOC107769964 
 cre-r.1   CHLRE_12g540350v5   uncharacterized protein 
 cre-r.1   CHLRE_12g540400v5   uncharacterized protein 

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Top 50 coexpressed genes to 123046458 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123046458 (tae-r.2 coexpression data)

CoexMap"123046458"


taeLOC123046458 | Entrez gene ID : 123046458    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 3 2 1 1 1 2 3 3 3 1 2 1 3 3 3 1 3 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03018 [list] [network] RNA degradation (374 genes)
GO BP
GO:0006402 [list] [network] mRNA catabolic process  (217 genes)  IEA  
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (107 genes)  IEA  
GO MF
Protein XP_044325769.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  cysk 2,  vacu 1,  E.R._vacu 1,  cyto_pero 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_044325769.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_044325769.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123046458
tae-r.2
for
123054307
tae-r.2
for
123190192
tae-r.2
for
123105303
hvu-r.1
for
123427622
hvu-r.1
for
123431497
hvu-r.1
for
123452562
bdi-r.1
for
100841771
bdi-r.1
for
100837139
osa-u.5
for
9272009
zma-u.5
for
100193338
sbi-r.1
for
8072335
ath-u.5
for
AT3G20800
ath-u.5
for
AT5G12980
gma-u.5
for
100801266
gma-u.5
for
100792784
gma-u.5
for
100784529
sly-u.5
for
101260874
sly-u.5
for
101265516
sly-u.5
for
101263473
bra-r.6
for
103855988
bra-r.6
for
103869276
bra-r.6
for
103835726
vvi-u.5
for
100265941
ppo-u.5
for
7470819
ppo-u.5
for
7483613
mtr-u.5
for
25488987
ghi-r.1
for
107963045
ghi-r.1
for
107945315
ghi-r.1
for
107889925
bna-r.1
for
106454713
bna-r.1
for
125603095
bna-r.1
for
106451861
sot-r.1
for
102595126
sot-r.1
for
102586245
sot-r.1
for
102596009
cit-r.1
for
102618037
nta-r.1
for
107807908
nta-r.1
for
107783900
nta-r.1
for
107769964
cre-r.1
for
CHLRE_12g540350v5
cre-r.1
for
CHLRE_12g540400v5


Ortholog ID: 3107
Species tae tae tae hvu hvu hvu bdi bdi osa zma sbi ath ath gma gma sly sly sly bra bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna sot sot sot cit nta nta nta cre cre
Symbol LOC123046458 LOC123190192 LOC123105303 LOC123427622 LOC123431497 LOC123452562 LOC100841771 LOC100837139 LOC9272009 LOC100193338 LOC8072335 AT3G20800 AT5G12980 LOC100792784 LOC100784529 LOC101260874 LOC101265516 LOC101263473 LOC103855988 LOC103869276 LOC103835726 LOC100265941 LOC7470819 LOC7483613 LOC25488987 LOC107945315 LOC107889925 LOC121225310 LOC125603095 LOC106451861 LOC106401806 LOC102595126 LOC102586245 LOC102596009 LOC102618037 LOC107807908 LOC107769964 LOC107787317 CHLRE_12g540350v5 CHLRE_12g540400v5
Function* CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9-like CCR4-NOT transcription complex subunit 9-like CCR4-NOT transcription complex subunit 9-like CCR4-NOT transcription complex subunit 9 cell differentiation protein rcd1 uncharacterized LOC9272009 uncharacterized LOC100193338 CCR4-NOT transcription complex subunit 9 Cell differentiation, Rcd1-like protein Cell differentiation, Rcd1-like protein CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 uncharacterized LOC101260874 uncharacterized LOC101265516 uncharacterized LOC101263473 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 uncharacterized LOC100265941 uncharacterized LOC7470819 uncharacterized LOC7483613 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9-like CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 cell differentiation protein RCD1 homolog cell differentiation protein RCD1 homolog cell differentiation protein RCD1 homolog uncharacterized LOC102618037 uncharacterized LOC107807908 uncharacterized LOC107769964 uncharacterized LOC107787317 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04136 Autophagy - other 3
tae04382 Cornified envelope formation 3
tae00310 Lysine degradation 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04136 Autophagy - other 3
tae04382 Cornified envelope formation 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 7
bdi03060 Protein export 4
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 8
osa03040 Spliceosome 2
osa04120 Ubiquitin mediated proteolysis 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
zma03015 mRNA surveillance pathway 2
zma04136 Autophagy - other 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath03050 Proteasome 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00053 Ascorbate and aldarate metabolism 2
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 7
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly04130 SNARE interactions in vesicular transport 2
sly03083 Polycomb repressive complex 2
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00941 Flavonoid biosynthesis 8
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
bra04626 Plant-pathogen interaction 2
bra00190 Oxidative phosphorylation 2
bra04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo00510 N-Glycan biosynthesis 2
ppo00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 9
mtr00710 Carbon fixation by Calvin cycle 4
mtr01200 Carbon metabolism 4
mtr00010 Glycolysis / Gluconeogenesis 3
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 3
ghi04120 Ubiquitin mediated proteolysis 2
ghi04814 Motor proteins 2
ghi04820 Cytoskeleton in muscle cells 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna00010 Glycolysis / Gluconeogenesis 4
bna00562 Inositol phosphate metabolism 4
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 3
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03018 RNA degradation 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre03013 Nucleocytoplasmic transport 2
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123046458 123190192 123105303 123427622 123431497 123452562 100841771 100837139 9272009 100193338 8072335 821628 831138 100792784 100784529 101260874 101265516 101263473 103855988 103869276 103835726 100265941 7470819 7483613 25488987 107945315 107889925 121225310 125603095 106451861 106401806 102595126 102586245 102596009 102618037 107807908 107769964 107787317 5719484 5719485
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