ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123088079	uncharacterized LOC123088079
tae-r.2	123151001	uncharacterized LOC123151001
tae-r.2	123167200	uncharacterized LOC123167200
hvu-r.1	123411238	uncharacterized LOC123411238
bdi-r.1	100846437	uncharacterized LOC100846437
osa-u.5	4340143	uncharacterized LOC4340143
zma-u.5	100193132	uncharacterized LOC100193132
sbi-r.1	8071322	uncharacterized LOC8071322
ath-u.5	AT4G32960	BRISC/BRCA1-A complex protein
ath-u.5	AT4G32970	BRISC/BRCA1-A complex protein
gma-u.5	100527612	uncharacterized LOC100527612
sly-u.5	101267881	uncharacterized LOC101267881
bra-r.6	103862208	uncharacterized LOC103862208
vvi-u.5	100260976	uncharacterized LOC100260976
ppo-u.5	7463711	uncharacterized LOC7463711
mtr-u.5	25489640	BRISC and BRCA1-A complex member 1
ghi-r.1	107941871	uncharacterized LOC107941871
ghi-r.1	107906991	uncharacterized LOC107906991
bna-r.1	BNAC07G44040D	uncharacterized BNAC07G44040D
bna-r.1	106423403	uncharacterized LOC106423403
sot-r.1	102596388	uncharacterized LOC102596388
cit-r.1	102611871	hypothetical protein
nta-r.1	107824468	uncharacterized LOC107824468
nta-r.1	107779572	uncharacterized LOC107779572
nta-r.1	107759096	uncharacterized LOC107759096
cre-r.1	CHLRE_13g604850v5	uncharacterized protein

Annotation

functional annotation

KEGG

taes03440 [list] [network] Homologous recombination (198 genes)

GO BP

GO:0045739 [list] [network] positive regulation of DNA repair

(6 genes)

IEA

GO CC

GO:0070552 [list] [network] BRISC complex	(9 genes)	IEA
GO:0070531 [list] [network] BRCA1-A complex	(31 genes)	IEA

GO MF

Protein

XP_044366173.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 2, cyto 1, extr 1

(predict for XP_044366173.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_044366173.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123088079	tae-r.2 for 123151001	tae-r.2 for 123167200	hvu-r.1 for 123411238	bdi-r.1 for 100846437	osa-u.5 for 4340143	zma-u.5 for 100193132	sbi-r.1 for 8071322	ath-u.5 for AT4G32960	ath-u.5 for AT4G32970	gma-u.5 for 100527612	sly-u.5 for 101267881	bra-r.6 for 103862208	vvi-u.5 for 100260976	ppo-u.5 for 7463711	mtr-u.5 for 25489640	ghi-r.1 for 107941871	ghi-r.1 for 107906991	bna-r.1 for BNAC07G44040D	bna-r.1 for 106423403	sot-r.1 for 102596388	cit-r.1 for 102611871	nta-r.1 for 107824468	nta-r.1 for 107779572	nta-r.1 for 107759096	cre-r.1 for CHLRE_13g604850v5

Ortholog

Ortholog ID: 9060

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC123088079

uncharacterized LOC123151001

uncharacterized LOC123167200

uncharacterized LOC123411238

uncharacterized LOC100846437

uncharacterized LOC4340143

uncharacterized LOC100193132

uncharacterized LOC8071322

BRISC/BRCA1-A complex protein

uncharacterized LOC100527612

uncharacterized LOC101267881

uncharacterized LOC103862208

uncharacterized LOC100260976

uncharacterized LOC7463711

BRISC and BRCA1-A complex member 1

uncharacterized LOC107941871

uncharacterized LOC107906991

uncharacterized BNAC07G44040D

uncharacterized LOC106423403

uncharacterized LOC102596388

hypothetical protein

uncharacterized LOC107824468

uncharacterized LOC107779572

uncharacterized LOC107779842

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03440	Homologous recombination	3
tae04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00061	Fatty acid biosynthesis	4
tae01212	Fatty acid metabolism	4
tae04120	Ubiquitin mediated proteolysis	3
tae00780	Biotin metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03420	Nucleotide excision repair	2
bdi04141	Protein processing in endoplasmic reticulum	2
bdi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03013	Nucleocytoplasmic transport	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03272	Virion - Hepatitis viruses	6
bna04144	Endocytosis	6
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03272	Virion - Hepatitis viruses	6
bna04144	Endocytosis	6
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03420	Nucleotide excision repair	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	3
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta00920	Sulfur metabolism	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

123088079

123151001

123167200

123411238

100846437

4340143

100193132

8071322

829433

829434

100527612

101267881

103862208

100260976

7463711

25489640

107941871

107906991

106406986

106423403

102596388

102611871

107824468

107779572

107779842

5724679

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123088079 (tae-r.2 coexpression data)

Top 50 enrichment test to 123088079 (tae-r.2 coexpression data)


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	1	1	1	2	1	1	1	1	1	1	2	2	1	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123088079 (tae-r.2 coexpression data)

Top 50 enrichment test to 123088079 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**