ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	543189	fatty acid desaturase DES3
tae-r.2	123091705	fatty acid desaturase DES3
tae-r.2	123086342	fatty acid desaturase DES3
tae-r.2	123085571	omega-3 fatty acid desaturase, chloroplastic
hvu-r.1	123424595	omega-3 fatty acid desaturase, chloroplastic-like
hvu-r.1	123448149	fatty acid desaturase DES3-like
hvu-r.1	123395843	fatty acid desaturase DES3-like
bdi-r.1	100831377	omega-3 fatty acid desaturase, chloroplastic
bdi-r.1	100840287	omega-3 fatty acid desaturase, chloroplastic
bdi-r.1	100824939	fatty acid desaturase DES3
osa-u.5	4351253	fatty acid desaturase DES3
osa-u.5	4332500	omega-3 fatty acid desaturase, endoplasmic reticulum
osa-u.5	4344389	omega-3 fatty acid desaturase, chloroplastic
zma-u.5	542222	fatty acid desaturase 7
zma-u.5	100281245	omega-3 fatty acid desaturase
zma-u.5	103644592	omega-3 fatty acid desaturase, chloroplastic
sbi-r.1	8055482	fatty acid desaturase DES3-like
sbi-r.1	8072903	probable fatty acid desaturase DES1
ath-u.5	FAD7	fatty acid desaturase 7
ath-u.5	FAD8	fatty acid desaturase 8
ath-u.5	FAD3	fatty acid desaturase 3
gma-u.5	FAD7-2	omega-3 fatty acid desaturase, chloroplastic
gma-u.5	FAD7-1	omega-3 fatty acid desaturase
gma-u.5	FAD8-1	omega-3 fatty acid desaturase
sly-u.5	100134915	omega-3 fatty acid desaturase
sly-u.5	Fad7	omega-3 fatty acid desaturase
bra-r.6	103864998	acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum
bra-r.6	103870371	omega-3 fatty acid desaturase, chloroplastic
bra-r.6	103850591	temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic
vvi-u.5	100247097	omega-3 fatty acid desaturase, chloroplastic
vvi-u.5	100260414	omega-3 fatty acid desaturase, chloroplastic
ppo-u.5	7494502	omega-3 fatty acid desaturase, chloroplastic
ppo-u.5	7490323	omega-3 fatty acid desaturase, chloroplastic
ppo-u.5	7466077	omega-3 fatty acid desaturase, chloroplastic
mtr-u.5	11411563	omega-3 fatty acid desaturase, chloroplastic
mtr-u.5	25498767	omega-3 fatty acid desaturase, chloroplastic
mtr-u.5	11415576	omega-3 fatty acid desaturase, endoplasmic reticulum
ghi-r.1	107948941	omega-3 fatty acid desaturase, chloroplastic-like
ghi-r.1	107940880	acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like
ghi-r.1	107931808	omega-3 fatty acid desaturase, chloroplastic-like
bna-r.1	111197728	omega-3 fatty acid desaturase, chloroplastic-like
bna-r.1	125585240	acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like
bna-r.1	125584238	acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like
sot-r.1	102596735	omega-3 fatty acid desaturase, endoplasmic reticulum-like
sot-r.1	102597672	omega-3 fatty acid desaturase, chloroplastic-like
sot-r.1	102597287	omega-3 fatty acid desaturase, endoplasmic reticulum-like
cit-r.1	102626347	acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like
cit-r.1	102611986	omega-3 fatty acid desaturase, chloroplastic-like
nta-r.1	107786526	omega-3 fatty acid desaturase, endoplasmic reticulum-like
nta-r.1	107832399	omega-3 fatty acid desaturase, chloroplastic-like
nta-r.1	107804927	omega-3 fatty acid desaturase, endoplasmic reticulum-like
cre-r.1	CHLRE_01g038600v5	uncharacterized protein

Top 50 coexpressed genes to 543189 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 543189 (tae-r.2 coexpression data)

CoexMap"543189"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006629 [list] [network] lipid metabolic process

(2680 genes)

IEA

GO CC

GO MF

GO:0016717 [list] [network] oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

(65 genes)

IEA

Protein

XP_044388152.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, E.R. 3, chlo 1, vacu 1, pero 1, cysk 1, golg 1

(predict for XP_044388152.1)

Subcellular
localization
TargetP

other 8

(predict for XP_044388152.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 543189	tae-r.2 for 123091705	tae-r.2 for 123086342	tae-r.2 for 123085571	hvu-r.1 for 123424595	hvu-r.1 for 123448149	hvu-r.1 for 123395843	bdi-r.1 for 100831377	bdi-r.1 for 100840287	bdi-r.1 for 100824939	osa-u.5 for 4351253	osa-u.5 for 4332500	osa-u.5 for 4344389	zma-u.5 for 542222	zma-u.5 for 100281245	zma-u.5 for 103644592	sbi-r.1 for 8055482	sbi-r.1 for 8072903	ath-u.5 for FAD7	ath-u.5 for FAD8	ath-u.5 for FAD3	gma-u.5 for FAD7-2	gma-u.5 for FAD7-1	gma-u.5 for FAD8-1	sly-u.5 for 100134915	sly-u.5 for Fad7	bra-r.6 for 103864998	bra-r.6 for 103870371	bra-r.6 for 103850591	vvi-u.5 for 100247097	vvi-u.5 for 100260414	ppo-u.5 for 7494502	ppo-u.5 for 7490323	ppo-u.5 for 7466077	mtr-u.5 for 11411563	mtr-u.5 for 25498767	mtr-u.5 for 11415576	ghi-r.1 for 107948941	ghi-r.1 for 107940880	ghi-r.1 for 107931808	bna-r.1 for 111197728	bna-r.1 for 125585240	bna-r.1 for 125584238	sot-r.1 for 102596735	sot-r.1 for 102597672	sot-r.1 for 102597287	cit-r.1 for 102626347	cit-r.1 for 102611986	nta-r.1 for 107786526	nta-r.1 for 107832399	nta-r.1 for 107804927	cre-r.1 for CHLRE_01g038600v5

Ortholog

Ortholog ID: 865

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

FAD7

FAD8

FAD3

FAD3B

FAD3-2b

FAD8.2

Fad7

Function^*

fatty acid desaturase DES3

omega-3 fatty acid desaturase, chloroplastic

fatty acid desaturase DES3

omega-3 fatty acid desaturase, chloroplastic-like

fatty acid desaturase DES3-like

omega-3 fatty acid desaturase, chloroplastic

fatty acid desaturase DES3

omega-3 fatty acid desaturase, chloroplastic

fatty acid desaturase DES3

fatty acid desaturase 7

omega-3 fatty acid desaturase

fatty acid desaturase DES3

temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic

fatty acid desaturase 7

fatty acid desaturase 8

fatty acid desaturase 3

omega-3 fatty acid desaturase, endoplasmic reticulum

omega-3 fatty acid desaturase D

omega-3 fatty acid desaturase, chloroplastic

omega-3 fatty acid desaturase

temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic

acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum

omega-3 fatty acid desaturase, chloroplastic

acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum

omega-3 fatty acid desaturase, chloroplastic

omega-3 fatty acid desaturase, endoplasmic reticulum

acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like

omega-3 fatty acid desaturase, chloroplastic-like

omega-3 fatty acid desaturase, chloroplastic

omega-3 fatty acid desaturase, chloroplastic-like

omega-3 fatty acid desaturase, endoplasmic reticulum-like

temperature-sensitive omega-3 fatty acid desaturase, chloroplastic-like

omega-3 fatty acid desaturase, endoplasmic reticulum-like

omega-3 fatty acid desaturase, chloroplastic-like

omega-3 fatty acid desaturase, endoplasmic reticulum-like

acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like

omega-3 fatty acid desaturase, chloroplastic-like

omega-3 fatty acid desaturase, endoplasmic reticulum-like

omega-3 fatty acid desaturase, chloroplastic-like

omega-3 fatty acid desaturase, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	7
tae00591	Linoleic acid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00710	Carbon fixation by Calvin cycle	4
bdi01200	Carbon metabolism	4
bdi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	3
bdi00520	Amino sugar and nucleotide sugar metabolism	2
bdi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01250	Biosynthesis of nucleotide sugars	5
osa00520	Amino sugar and nucleotide sugar metabolism	4
osa00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	3
osa04814	Motor proteins	2
osa01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	3
zma00053	Ascorbate and aldarate metabolism	2
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	3
sbi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00630	Glyoxylate and dicarboxylate metabolism	3
ath00710	Carbon fixation by Calvin cycle	3
ath01200	Carbon metabolism	3
ath00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	5
gma00710	Carbon fixation by Calvin cycle	4
gma00020	Citrate cycle (TCA cycle)	3
gma00270	Cysteine and methionine metabolism	3
gma00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00910	Nitrogen metabolism	2
gma00260	Glycine, serine and threonine metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma00670	One carbon pool by folate	2
gma00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00240	Pyrimidine metabolism	3
sly01232	Nucleotide metabolism	3
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00860	Porphyrin metabolism	2
vvi00710	Carbon fixation by Calvin cycle	2
vvi01200	Carbon metabolism	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	3
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	4
vvi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
vvi00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4
ppo00592	alpha-Linolenic acid metabolism	2
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00260	Glycine, serine and threonine metabolism	4
mtr00630	Glyoxylate and dicarboxylate metabolism	4
mtr01200	Carbon metabolism	4
mtr00670	One carbon pool by folate	3
mtr01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00541	Biosynthesis of various nucleotide sugars	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00260	Glycine, serine and threonine metabolism	2
ghi00561	Glycerolipid metabolism	2
ghi00630	Glyoxylate and dicarboxylate metabolism	2
ghi01200	Carbon metabolism	2
ghi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00920	Sulfur metabolism	3
sot01320	Sulfur cycle	3
sot00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3
cit04016	MAPK signaling pathway - plant	2
cit04070	Phosphatidylinositol signaling system	2
cit04626	Plant-pathogen interaction	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
nta01230	Biosynthesis of amino acids	3
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01212	Fatty acid metabolism	3
cre01240	Biosynthesis of cofactors	2
cre00061	Fatty acid biosynthesis	2
cre01040	Biosynthesis of unsaturated fatty acids	2
cre00906	Carotenoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

123086342

123085571

123096668

123424595

123448149

123395843

100831377

100840287

100824939

4351253

4344389

4349544

542222

100281245

100283566

8079957

8084992

820288

830441

817548

100037456

732540

100799517

100134915

544203

103850591

103857278

103867994

100247097

100260414

100243349

7490323

7466077

7468059

11411563

25498767

11415576

107940880

107958053

121207887

111197728

106377255

106380841

102596735

102597672

102597287

102626347

102611986

107786526

107832399

107807128

5715517

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	2	3	3	2	3	2	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 543189 (tae-r.2 coexpression data)

Top 50 enrichment test to 543189 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**