ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	606368	delta-1-pyrroline-5-carboxylate synthase 1
tae-r.2	123071410	delta-1-pyrroline-5-carboxylate synthase 2
tae-r.2	123062592	delta-1-pyrroline-5-carboxylate synthase 2
tae-r.2	123079750	delta-1-pyrroline-5-carboxylate synthase 2
hvu-r.1	123445639	delta-1-pyrroline-5-carboxylate synthase 1
hvu-r.1	123444897	delta-1-pyrroline-5-carboxylate synthase 2
bdi-r.1	100822226	delta-1-pyrroline-5-carboxylate synthase 1
bdi-r.1	100823447	delta-1-pyrroline-5-carboxylate synthase 2
osa-u.5	4324853	delta-1-pyrroline-5-carboxylate synthase 2-like
osa-u.5	P5CS1	delta-1-pyrroline-5-carboxylate synthase 1-like
zma-u.5	778431	proline responding1
zma-u.5	103630430	delta-1-pyrroline-5-carboxylate synthase-like
zma-u.5	100280719	uncharacterized LOC100280719
sbi-r.1	8072535	delta-1-pyrroline-5-carboxylate synthase 1
sbi-r.1	110430201	delta-1-pyrroline-5-carboxylate synthase 1
sbi-r.1	110433516	delta-1-pyrroline-5-carboxylate synthase 2
ath-u.5	P5CS1	delta1-pyrroline-5-carboxylate synthase 1
ath-u.5	P5CS2	delta 1-pyrroline-5-carboxylate synthase 2
gma-u.5	100800143	delta-1-pyrroline-5-carboxylate synthase
gma-u.5	ALDH18B4	delta-1-pyrroline-5-carboxylate synthase
gma-u.5	ALDH18B2	delta-1-pyrroline-5-carboxylate synthase
sly-u.5	101244293	delta-1-pyrroline-5-carboxylate synthase-like
sly-u.5	PRO2	delta 1-pyrroline-5-carboxylate synthetase
bra-r.6	103857883	delta-1-pyrroline-5-carboxylate synthase A
bra-r.6	103867010	delta-1-pyrroline-5-carboxylate synthase A
bra-r.6	103865746	delta-1-pyrroline-5-carboxylate synthase A
vvi-u.5	P5CS	pyrroline-5-carboxylate synthetase
ppo-u.5	7490371	delta-1-pyrroline-5-carboxylate synthase
ppo-u.5	18101402	delta-1-pyrroline-5-carboxylate synthase
mtr-u.5	11410328	delta-1-pyrroline-5-carboxylate synthase
mtr-u.5	25491556	delta-1-pyrroline-5-carboxylate synthase
mtr-u.5	25498588	delta-1-pyrroline-5-carboxylate synthase
ghi-r.1	107899340	delta-1-pyrroline-5-carboxylate synthase
ghi-r.1	107935332	delta-1-pyrroline-5-carboxylate synthase
ghi-r.1	107940896	delta-1-pyrroline-5-carboxylate synthase
bna-r.1	106445364	delta-1-pyrroline-5-carboxylate synthase B
bna-r.1	106391557	delta-1-pyrroline-5-carboxylate synthase A
bna-r.1	106395965	delta-1-pyrroline-5-carboxylate synthase A
sot-r.1	102582423	delta-1-pyrroline-5-carboxylate synthase
sot-r.1	102594541	delta-1-pyrroline-5-carboxylate synthase-like
cit-r.1	102619471	delta-1-pyrroline-5-carboxylate synthase-like
cit-r.1	102609124	delta-1-pyrroline-5-carboxylate synthase
nta-r.1	107773204	delta-1-pyrroline-5-carboxylate synthase
nta-r.1	107776743	delta-1-pyrroline-5-carboxylate synthase
nta-r.1	107797411	delta-1-pyrroline-5-carboxylate synthase
cre-r.1	CHLRE_03g146527v5	uncharacterized protein

Top 50 coexpressed genes to 606368 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 606368 (tae-r.2 coexpression data)

CoexMap"606368"

[Cytoscape]

Annotation

functional annotation

KEGG

taes00330 [list] [network] Arginine and proline metabolism (179 genes)

taes01230 [list] [network] Biosynthesis of amino acids (686 genes)

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(13575 genes)

IEA

GO MF

GO:0004349 [list] [network] glutamate 5-kinase activity	(6 genes)	IEA
GO:0004350 [list] [network] glutamate-5-semialdehyde dehydrogenase activity	(7 genes)	IEA
GO:0005524 [list] [network] ATP binding	(7858 genes)	IEA

Protein

XP_044337300.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, plas 2, cyto_nucl 2, chlo 1, E.R._plas 1

(predict for XP_044337300.1)

Subcellular
localization
TargetP

other 7

(predict for XP_044337300.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 606368	tae-r.2 for 123071410	tae-r.2 for 123062592	tae-r.2 for 123079750	hvu-r.1 for 123445639	hvu-r.1 for 123444897	bdi-r.1 for 100822226	bdi-r.1 for 100823447	osa-u.5 for 4324853	osa-u.5 for P5CS1	zma-u.5 for 778431	zma-u.5 for 103630430	zma-u.5 for 100280719	sbi-r.1 for 8072535	sbi-r.1 for 110430201	sbi-r.1 for 110433516	ath-u.5 for P5CS1	ath-u.5 for P5CS2	gma-u.5 for 100800143	gma-u.5 for ALDH18B4	gma-u.5 for ALDH18B2	sly-u.5 for 101244293	sly-u.5 for PRO2	bra-r.6 for 103857883	bra-r.6 for 103867010	bra-r.6 for 103865746	vvi-u.5 for P5CS	ppo-u.5 for 7490371	ppo-u.5 for 18101402	mtr-u.5 for 11410328	mtr-u.5 for 25491556	mtr-u.5 for 25498588	ghi-r.1 for 107899340	ghi-r.1 for 107935332	ghi-r.1 for 107940896	bna-r.1 for 106445364	bna-r.1 for 106391557	bna-r.1 for 106395965	sot-r.1 for 102582423	sot-r.1 for 102594541	cit-r.1 for 102619471	cit-r.1 for 102609124	nta-r.1 for 107773204	nta-r.1 for 107776743	nta-r.1 for 107797411	cre-r.1 for CHLRE_03g146527v5

Ortholog

Ortholog ID: 2021

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

P5CS1

P5CS1

P5CS2

PRO2

P5CS

Function^*

delta-1-pyrroline-5-carboxylate synthase 2

delta-1-pyrroline-5-carboxylate synthase 1

delta-1-pyrroline-5-carboxylate synthase 2

delta-1-pyrroline-5-carboxylate synthase 1

delta-1-pyrroline-5-carboxylate synthase 2

delta-1-pyrroline-5-carboxylate synthase 2-like

delta-1-pyrroline-5-carboxylate synthase 1-like

proline responding1

delta-1-pyrroline-5-carboxylate synthase-like

uncharacterized LOC100280719

delta-1-pyrroline-5-carboxylate synthase 1

delta-1-pyrroline-5-carboxylate synthase 2

delta1-pyrroline-5-carboxylate synthase 1

delta 1-pyrroline-5-carboxylate synthase 2

delta-1-pyrroline-5-carboxylate synthase

delta-1-pyrroline-5-carboxylate synthase-like

delta 1-pyrroline-5-carboxylate synthetase

delta-1-pyrroline-5-carboxylate synthase A

pyrroline-5-carboxylate synthetase

delta-1-pyrroline-5-carboxylate synthase

delta-1-pyrroline-5-carboxylate synthase B

delta-1-pyrroline-5-carboxylate synthase A

delta-1-pyrroline-5-carboxylate synthase B-like

delta-1-pyrroline-5-carboxylate synthase

delta-1-pyrroline-5-carboxylate synthase-like

delta-1-pyrroline-5-carboxylate synthase

delta-1-pyrroline-5-carboxylate synthase-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00330	Arginine and proline metabolism	3
tae01230	Biosynthesis of amino acids	3
tae04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00330	Arginine and proline metabolism	3
tae01230	Biosynthesis of amino acids	3
tae04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	8
tae00330	Arginine and proline metabolism	6
tae01230	Biosynthesis of amino acids	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	7
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
hvu00330	Arginine and proline metabolism	2
hvu00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	8
bdi00640	Propanoate metabolism	4
bdi00785	Lipoic acid metabolism	3
bdi01210	2-Oxocarboxylic acid metabolism	3
bdi04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	5
bdi01200	Carbon metabolism	4
bdi00020	Citrate cycle (TCA cycle)	3
bdi01210	2-Oxocarboxylic acid metabolism	3
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa00520	Amino sugar and nucleotide sugar metabolism	3
osa01250	Biosynthesis of nucleotide sugars	3
osa00190	Oxidative phosphorylation	3
osa04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	7
osa04145	Phagosome	7
osa04142	Lysosome	3
osa00970	Aminoacyl-tRNA biosynthesis	2
osa00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00330	Arginine and proline metabolism	2
zma01230	Biosynthesis of amino acids	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma03008	Ribosome biogenesis in eukaryotes	2
zma00330	Arginine and proline metabolism	2
zma01230	Biosynthesis of amino acids	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	5
zma01230	Biosynthesis of amino acids	5
zma00710	Carbon fixation by Calvin cycle	4
zma00564	Glycerophospholipid metabolism	4
zma00220	Arginine biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00330	Arginine and proline metabolism	3
sbi00250	Alanine, aspartate and glutamate metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00330	Arginine and proline metabolism	4
sbi00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2
sbi00250	Alanine, aspartate and glutamate metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	3
gma00330	Arginine and proline metabolism	2
gma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	3
gma00511	Other glycan degradation	3
gma00531	Glycosaminoglycan degradation	3
gma04142	Lysosome	3
gma00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	3
gma00330	Arginine and proline metabolism	2
gma01230	Biosynthesis of amino acids	2
gma04016	MAPK signaling pathway - plant	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly00940	Phenylpropanoid biosynthesis	3
sly00941	Flavonoid biosynthesis	3
sly00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
sly00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00330	Arginine and proline metabolism	4
bra01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00330	Arginine and proline metabolism	4
bra01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi01200	Carbon metabolism	2
vvi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00970	Aminoacyl-tRNA biosynthesis	5
ppo00190	Oxidative phosphorylation	4
ppo01230	Biosynthesis of amino acids	4
ppo01200	Carbon metabolism	3
ppo00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	3
mtr00230	Purine metabolism	2
mtr00010	Glycolysis / Gluconeogenesis	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00330	Arginine and proline metabolism	4
mtr01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00330	Arginine and proline metabolism	7
mtr01230	Biosynthesis of amino acids	6
mtr00710	Carbon fixation by Calvin cycle	3
mtr01200	Carbon metabolism	3
mtr00250	Alanine, aspartate and glutamate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00040	Pentose and glucuronate interconversions	4
ghi00053	Ascorbate and aldarate metabolism	4
ghi00561	Glycerolipid metabolism	4
ghi00620	Pyruvate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00330	Arginine and proline metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00330	Arginine and proline metabolism	4
ghi00480	Glutathione metabolism	3
ghi01230	Biosynthesis of amino acids	2
ghi00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	4
bna01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	6
bna01230	Biosynthesis of amino acids	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	4
bna01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	5
sot00020	Citrate cycle (TCA cycle)	4
sot00620	Pyruvate metabolism	4
sot01210	2-Oxocarboxylic acid metabolism	4
sot01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03460	Fanconi anemia pathway	2
cit03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00330	Arginine and proline metabolism	2
nta01230	Biosynthesis of amino acids	2
nta00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01230	Biosynthesis of amino acids	4
nta00330	Arginine and proline metabolism	2
nta00904	Diterpenoid biosynthesis	2
nta00220	Arginine biosynthesis	2
nta00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2
nta00330	Arginine and proline metabolism	2
nta01230	Biosynthesis of amino acids	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	3
cre00600	Sphingolipid metabolism	2
cre04382	Cornified envelope formation	2

Expression

Expression pattern

Entrez Gene ID^*

123062592

123079750

123182224

123445639

123444897

100822226

100823447

4324853

4338979

778431

103630430

100280719

8072535

110430201

110433516

818566

824727

100816150

100809989

100791063

101244293

544281

103867010

103865746

100232881

7490371

18101402

11410328

25491556

25498588

107899340

107935332

107940896

106445364

106391557

106415918

102582423

102594541

102619471

102609124

107773204

107797411

107819560

5721215

The preparation time of this page was 0.1 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	2	3	3	2	3	2	3	1	2	3	3	3	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 606368 (tae-r.2 coexpression data)

Top 50 enrichment test to 606368 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**