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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AT3G06770   Pectin lyase-like superfamily protein 
 ath-u.5   AT3G06770   Pectin lyase-like superfamily protein 
 ath-r.7   AT3G06770   Pectin lyase-like superfamily protein 
 ath-m.9   AT3G06770   Pectin lyase-like superfamily protein 
 ath-e.2   AT3G06770   Pectin lyase-like superfamily protein 
 ath-m.4.hor   AT3G06770   Pectin lyase-like superfamily protein 
 ath-m.4.lig   AT3G06770   Pectin lyase-like superfamily protein 
 ath-m.4.str   AT3G06770   Pectin lyase-like superfamily protein 
 ath-m.4.tis   AT3G06770   Pectin lyase-like superfamily protein 
 ath-u.5   AT3G16850   Pectin lyase-like superfamily protein 
 ath-u.5   AT5G49215   Pectin lyase-like superfamily protein 
 bra-r.6   103875025   probable polygalacturonase 
 bra-r.6   103869730   probable polygalacturonase 
 bra-r.6   103859685   probable polygalacturonase 
 bna-r.1   106452075   probable polygalacturonase 
 bna-r.1   106411294   probable polygalacturonase 
 bna-r.1   106347677   probable polygalacturonase 
 ghi-r.1   107926375   probable polygalacturonase 
 ghi-r.1   107896644   probable polygalacturonase 
 ghi-r.1   107891850   probable polygalacturonase 
 cit-r.1   102624542   probable polygalacturonase 
 gma-u.5   100815184   probable polygalacturonase 
 gma-u.5   100806574   probable polygalacturonase 
 vvi-u.5   109122642   probable polygalacturonase 
 vvi-u.5   100241496   probable polygalacturonase 
 vvi-u.5   100247060   probable polygalacturonase 
 ppo-u.5   7477215   probable polygalacturonase 
 ppo-u.5   18101890   probable polygalacturonase 
 mtr-u.5   25488046   probable polygalacturonase 
 mtr-u.5   11420255   probable polygalacturonase 
 sly-u.5   101268765   probable polygalacturonase 
 sly-u.5   101264974   probable polygalacturonase 
 sot-r.1   102598202   probable polygalacturonase 
 sot-r.1   102580232   probable polygalacturonase-like 
 nta-r.1   107811919   putative polygalacturonase 
 nta-r.1   107776286   putative polygalacturonase 
 nta-r.1   107764241   putative polygalacturonase 
 osa-u.5   4351055   probable polygalacturonase 
 osa-u.5   4352486   probable polygalacturonase 
 zma-u.5   100191454   uncharacterized LOC100191454 
 zma-u.5   100282607   polygalacturonase 
 tae-r.2   123102593   probable polygalacturonase 
 tae-r.2   123096876   probable polygalacturonase 
 tae-r.2   123110779   probable polygalacturonase 
 hvu-r.1   123395463   probable polygalacturonase 
 sbi-r.1   8070181   probable polygalacturonase 
 bdi-r.1   100822979   probable polygalacturonase 
 bdi-r.1   100846127   probable polygalacturonase 

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Top 50 coexpressed genes to AT3G06770 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G06770 (ath-m.4.bio coexpression data)

CoexMap"819862"


athAT3G06770 | Entrez gene ID : 819862      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 1 2 3 2 2 2 2 3 2 2 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (601 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (69 genes)  IEA  
Protein NP_001326102.1 [sequence] [blastp]
NP_001326103.1 [sequence] [blastp]
NP_566292.1 [sequence] [blastp]
NP_850525.1 [sequence] [blastp]
NP_850526.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  cysk_nucl 3  (predict for NP_001326102.1)
chlo 4,  extr 2,  vacu 2,  chlo_mito 2  (predict for NP_001326103.1)
chlo 2,  nucl 2,  cyto 2,  cyto_nucl 2,  vacu 1,  cysk 1  (predict for NP_566292.1)
chlo 4,  extr 2,  nucl 1,  mito 1,  vacu 1  (predict for NP_850525.1)
chlo 2,  nucl 2,  cyto 2,  cyto_nucl 2,  vacu 1,  cysk 1  (predict for NP_850526.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001326102.1)
scret 8  (predict for NP_001326103.1)
other 5,  mito 3  (predict for NP_566292.1)
scret 8  (predict for NP_850525.1)
other 5,  mito 3  (predict for NP_850526.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
AT3G06770
ath-u.5
for
AT3G06770
ath-r.7
for
AT3G06770
ath-m.9
for
AT3G06770
ath-e.2
for
AT3G06770
ath-m.4.hor
for
AT3G06770
ath-m.4.lig
for
AT3G06770
ath-m.4.str
for
AT3G06770
ath-m.4.tis
for
AT3G06770
ath-u.5
for
AT3G16850
ath-u.5
for
AT5G49215
bra-r.6
for
103875025
bra-r.6
for
103869730
bra-r.6
for
103859685
bna-r.1
for
106452075
bna-r.1
for
106411294
bna-r.1
for
106347677
ghi-r.1
for
107926375
ghi-r.1
for
107896644
ghi-r.1
for
107891850
cit-r.1
for
102624542
gma-u.5
for
100815184
gma-u.5
for
100806574
vvi-u.5
for
109122642
vvi-u.5
for
100241496
vvi-u.5
for
100247060
ppo-u.5
for
7477215
ppo-u.5
for
18101890
mtr-u.5
for
25488046
mtr-u.5
for
11420255
sly-u.5
for
101268765
sly-u.5
for
101264974
sot-r.1
for
102598202
sot-r.1
for
102580232
nta-r.1
for
107811919
nta-r.1
for
107776286
nta-r.1
for
107764241
osa-u.5
for
4351055
osa-u.5
for
4352486
zma-u.5
for
100191454
zma-u.5
for
100282607
tae-r.2
for
123102593
tae-r.2
for
123096876
tae-r.2
for
123110779
hvu-r.1
for
123395463
sbi-r.1
for
8070181
bdi-r.1
for
100822979
bdi-r.1
for
100846127


Ortholog ID: 2332
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma vvi vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu sbi bdi bdi
Symbol AT3G06770 AT3G16850 AT5G49215 LOC103875025 LOC103869730 LOC103859685 LOC106385691 LOC106403076 LOC106439444 LOC107896644 LOC107888934 LOC107940911 LOC102624542 LOC100801823 LOC100777503 LOC109122642 LOC100241496 LOC100247060 LOC7477215 LOC18101890 LOC25488046 LOC11420255 LOC101268765 LOC101264974 LOC102598202 LOC102580232 LOC107776286 LOC107764241 LOC142179336 LOC4351055 LOC4352486 LOC100191454 LOC100282607 LOC123096876 LOC123110779 LOC123091797 LOC123395463 LOC8070181 LOC100822979 LOC100846127
Function* Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase-like putative polygalacturonase putative polygalacturonase putative polygalacturonase probable polygalacturonase probable polygalacturonase uncharacterized LOC100191454 polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04145 Phagosome 4
sot04517 IgSF CAM signaling 4
sot04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 4
osa01250 Biosynthesis of nucleotide sugars 4
osa04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04145 Phagosome 2
zma04517 IgSF CAM signaling 2
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00511 Other glycan degradation 3
tae00513 Various types of N-glycan biosynthesis 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae00531 Glycosaminoglycan degradation 3
tae00600 Sphingolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00511 Other glycan degradation 3
tae00513 Various types of N-glycan biosynthesis 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae00531 Glycosaminoglycan degradation 3
tae00600 Sphingolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819862 820938 834981 103875025 103869730 103859685 106385691 106403076 106439444 107896644 107888934 107940911 102624542 100801823 100777503 109122642 100241496 100247060 7477215 18101890 25488046 11420255 101268765 101264974 102598202 102580232 107776286 107764241 142179336 4351055 4352486 100191454 100282607 123096876 123110779 123091797 123395463 8070181 100822979 100846127
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