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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AT3G13840   GRAS family transcription factor 
 ath-m.9   AT3G13840   GRAS family transcription factor 
 ath-m.4.hor   AT3G13840   GRAS family transcription factor 
 ath-m.4.lig   AT3G13840   GRAS family transcription factor 
 ath-m.4.str   AT3G13840   GRAS family transcription factor 
 ath-m.4.tis   AT3G13840   GRAS family transcription factor 
 gma-u.5   100810818   protein NODULATION SIGNALING PATHWAY 1 
 gma-u.5   NSP1   protein NODULATION SIGNALING PATHWAY 1 
 vvi-u.5   100261706   protein NODULATION SIGNALING PATHWAY 1 
 ppo-u.5   7478350   protein NODULATION SIGNALING PATHWAY 1 
 mtr-u.5   11434050   protein NODULATION SIGNALING PATHWAY 1 
 sly-u.5   101265210   protein NODULATION SIGNALING PATHWAY 1-like 
 sly-u.5   100037503   protein NODULATION SIGNALING PATHWAY 1 
 osa-u.5   107277847   protein NODULATION SIGNALING PATHWAY 1 

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Top 50 coexpressed genes to AT3G13840 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G13840 (ath-m.4.bio coexpression data)

CoexMap"820596"


athAT3G13840 | Entrez gene ID : 820596      
Species ath gma vvi ppo mtr sly osa hvu zma bna cit bra ghi sbi bdi nta tae cre sot
Paralog 6 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_188000.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_188000.1)
Subcellular
localization
TargetP
other 8  (predict for NP_188000.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
AT3G13840
ath-m.9
for
AT3G13840
ath-m.4.hor
for
AT3G13840
ath-m.4.lig
for
AT3G13840
ath-m.4.str
for
AT3G13840
ath-m.4.tis
for
AT3G13840
gma-u.5
for
100810818
gma-u.5
for
NSP1
vvi-u.5
for
100261706
ppo-u.5
for
7478350
mtr-u.5
for
11434050
sly-u.5
for
101265210
sly-u.5
for
100037503
osa-u.5
for
107277847


Ortholog ID: 10081
Species bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sly sot nta nta osa hvu
Symbol LOC103870073 LOC106452256 LOC111215722 LOC107897432 LOC107913863 LOC102626640 LOC100810818 NSP1 LOC100261706 LOC7478350 LOC11434050 LOC101265210 LOC100037503 LOC102595288 LOC107781397 LOC107784276 LOC107277847 LOC123428759
Function* scarecrow-like protein 29 scarecrow-like protein 29 scarecrow-like protein 29 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1-like protein NODULATION SIGNALING PATHWAY 1 nodulation-signaling pathway 1 protein-like nodulation-signaling pathway 1 protein-like protein NODULATION SIGNALING PATHWAY 1-like protein NODULATION SIGNALING PATHWAY 1 protein NODULATION SIGNALING PATHWAY 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 4
ghi04981 Folate transport and metabolism 4
ghi04075 Plant hormone signal transduction 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 4
ghi04981 Folate transport and metabolism 4
ghi04075 Plant hormone signal transduction 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 11
sly04145 Phagosome 2
sly03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 4
nta00410 beta-Alanine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
nta04075 Plant hormone signal transduction 2
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
hvu03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103870073 106452256 111215722 107897432 107913863 102626640 100810818 100806550 100261706 7478350 11434050 101265210 100037503 102595288 107781397 107784276 107277847 123428759
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