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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   TOP6B   topoisomerase 6 subunit B 
 ath-u.5   TOP6B   topoisomerase 6 subunit B 
 ath-r.7   TOP6B   topoisomerase 6 subunit B 
 ath-m.9   TOP6B   topoisomerase 6 subunit B 
 ath-e.2   TOP6B   topoisomerase 6 subunit B 
 ath-m.4.hor   TOP6B   topoisomerase 6 subunit B 
 ath-m.4.lig   TOP6B   topoisomerase 6 subunit B 
 ath-m.4.str   TOP6B   topoisomerase 6 subunit B 
 ath-m.4.tis   TOP6B   topoisomerase 6 subunit B 
 bra-r.6   103869277   DNA topoisomerase 6 subunit B 
 bna-r.1   106345840   DNA topoisomerase 6 subunit B 
 bna-r.1   125594253   DNA topoisomerase 6 subunit B 
 bna-r.1   106451858   DNA topoisomerase 6 subunit B 
 ghi-r.1   121225308   DNA topoisomerase 6 subunit B 
 ghi-r.1   107945355   DNA topoisomerase 6 subunit B 
 cit-r.1   102615212   DNA topoisomerase 6 subunit B 
 gma-u.5   100809558   DNA topoisomerase 6 subunit B 
 vvi-u.5   100265632   DNA topoisomerase 6 subunit B 
 ppo-u.5   18097264   DNA topoisomerase 6 subunit B 
 mtr-u.5   11421475   DNA topoisomerase 6 subunit B 
 sly-u.5   101263928   DNA topoisomerase 6 subunit B 
 sot-r.1   102592185   DNA topoisomerase 6 subunit B 
 nta-r.1   107815486   DNA topoisomerase 6 subunit B 
 nta-r.1   107763714   DNA topoisomerase 6 subunit B-like 
 osa-u.5   TOP6B   DNA topoisomerase 6 subunit B-like 
 zma-u.5   103632502   DNA topoisomerase 6 subunit B 
 tae-r.2   123120981   DNA topoisomerase 6 subunit B 
 tae-r.2   123111610   DNA topoisomerase 6 subunit B 
 tae-r.2   123103413   DNA topoisomerase 6 subunit B 
 hvu-r.1   123394977   DNA topoisomerase 6 subunit B 
 sbi-r.1   8062034   DNA topoisomerase 6 subunit B 
 bdi-r.1   100844704   DNA topoisomerase 6 subunit B 
 cre-r.1   CHLRE_01g019750v5   uncharacterized protein 

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Top 50 coexpressed genes to TOP6B (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TOP6B (ath-m.4.bio coexpression data)

CoexMap"821626"


athTOP6B | Entrez gene ID : 821626      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042023 [list] [network] DNA endoreduplication  (21 genes)  IMP  
GO:0010026 [list] [network] trichome differentiation  (86 genes)  IMP  
GO:0009741 [list] [network] response to brassinosteroid  (101 genes)  IMP  
GO:0007389 [list] [network] pattern specification process  (208 genes)  IMP  
GO:0000902 [list] [network] cell morphogenesis  (393 genes)  IMP  
GO CC
GO:0009330 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex  (3 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003918 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity  (10 genes)  ISS  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_188714.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  nucl 1  (predict for NP_188714.2)
Subcellular
localization
TargetP
other 8  (predict for NP_188714.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
TOP6B
ath-u.5
for
TOP6B
ath-r.7
for
TOP6B
ath-m.9
for
TOP6B
ath-e.2
for
TOP6B
ath-m.4.hor
for
TOP6B
ath-m.4.lig
for
TOP6B
ath-m.4.str
for
TOP6B
ath-m.4.tis
for
TOP6B
bra-r.6
for
103869277
bna-r.1
for
106345840
bna-r.1
for
125594253
bna-r.1
for
106451858
ghi-r.1
for
121225308
ghi-r.1
for
107945355
cit-r.1
for
102615212
gma-u.5
for
100809558
vvi-u.5
for
100265632
ppo-u.5
for
18097264
mtr-u.5
for
11421475
sly-u.5
for
101263928
sot-r.1
for
102592185
nta-r.1
for
107815486
nta-r.1
for
107763714
osa-u.5
for
TOP6B
zma-u.5
for
103632502
tae-r.2
for
123120981
tae-r.2
for
123111610
tae-r.2
for
123103413
hvu-r.1
for
123394977
sbi-r.1
for
8062034
bdi-r.1
for
100844704
cre-r.1
for
CHLRE_01g019750v5


Ortholog ID: 9498
Species ath bra bna bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol TOP6B LOC103869277 LOC106345840 LOC125594253 LOC106451858 LOC121225308 LOC107945355 LOC102615212 LOC100809558 LOC100265632 LOC18097264 LOC11421475 LOC101263928 LOC102592185 LOC107815486 LOC107763714 TOP6B LOC103632502 LOC123120981 LOC123111610 LOC123103413 LOC123394977 LOC8062034 LOC100844704 CHLRE_01g019750v5
Function* topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B-like DNA topoisomerase 6 subunit B-like DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 5
ghi03410 Base excision repair 3
ghi03420 Nucleotide excision repair 3
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
zma03082 ATP-dependent chromatin remodeling 2
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
bdi03020 RNA polymerase 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821626 103869277 106345840 125594253 106451858 121225308 107945355 102615212 100809558 100265632 18097264 11421475 101263928 102592185 107815486 107763714 4346606 103632502 123120981 123111610 123103413 123394977 8062034 100844704 5715184
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