ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	AT3G57930	rho GTPase-activating gacO-like protein
ath-u.5	AT3G57930	rho GTPase-activating gacO-like protein
ath-r.7	AT3G57930	rho GTPase-activating gacO-like protein
ath-m.9	AT3G57930	rho GTPase-activating gacO-like protein
ath-e.2	AT3G57930	rho GTPase-activating gacO-like protein
ath-m.4.hor	AT3G57930	rho GTPase-activating gacO-like protein
ath-m.4.lig	AT3G57930	rho GTPase-activating gacO-like protein
ath-m.4.str	AT3G57930	rho GTPase-activating gacO-like protein
ath-m.4.tis	AT3G57930	rho GTPase-activating gacO-like protein
ath-u.5	AT2G42190	rho GTPase-activating gacO-like protein
bra-r.6	103830127	cilia- and flagella-associated protein 251
bra-r.6	103863017	cilia- and flagella-associated protein 251
bra-r.6	103866614	cilia- and flagella-associated protein 251
bna-r.1	125574808	histone H3.v1-like
bna-r.1	111201404	protein pxr1-like
bna-r.1	106353218	uncharacterized LOC106353218
ghi-r.1	107948479	uncharacterized LOC107948479
ghi-r.1	107961704	uncharacterized LOC107961704
ghi-r.1	107924669	uncharacterized LOC107924669
cit-r.1	102626868	hypothetical protein
cit-r.1	102609268	uncharacterized LOC102609268
gma-u.5	100802389	uncharacterized LOC100802389
gma-u.5	100797825	uncharacterized LOC100797825
gma-u.5	100527546	uncharacterized LOC100527546
vvi-u.5	100248625	protein HEAT INTOLERANT 4
vvi-u.5	100262168	uncharacterized LOC100262168
ppo-u.5	112325732	uncharacterized LOC112325732
ppo-u.5	7487050	uncharacterized LOC7487050
ppo-u.5	18097262	uncharacterized LOC18097262
mtr-u.5	11436331	uncharacterized LOC11436331
mtr-u.5	11444222	uncharacterized LOC11444222
sly-u.5	101264948	uncharacterized LOC101264948
sly-u.5	101261472	uncharacterized LOC101261472
sly-u.5	101251341	uncharacterized LOC101251341
sot-r.1	102604651	uncharacterized LOC102604651
sot-r.1	102595006	uncharacterized LOC102595006
sot-r.1	102579056	uncharacterized LOC102579056
nta-r.1	107815171	uncharacterized LOC107815171
nta-r.1	107774614	uncharacterized LOC107774614
nta-r.1	107782416	uncharacterized LOC107782416
osa-u.5	4330527	uncharacterized LOC4330527
osa-u.5	4340891	pre-mRNA-processing protein 40A
zma-u.5	100274203	uncharacterized LOC100274203
zma-u.5	100272593	uncharacterized LOC100272593
tae-r.2	123168900	uncharacterized LOC123168900
tae-r.2	123152363	uncharacterized LOC123152363
tae-r.2	123145292	uncharacterized LOC123145292
hvu-r.1	123402381	uncharacterized LOC123402381
hvu-r.1	123410211	uncharacterized LOC123410211
sbi-r.1	8078255	uncharacterized LOC8078255
bdi-r.1	100836557	uncharacterized LOC100836557
bdi-r.1	100838669	uncharacterized LOC100838669

Top 50 coexpressed genes to AT3G57930 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G57930 (ath-m.4.bio coexpression data)

CoexMap"824962"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001319787.1 [sequence] [blastp]
NP_191352.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1	(predict for NP_001319787.1)
nucl 8, cyto 1	(predict for NP_191352.1)

Subcellular
localization
TargetP

mito 5, other 4	(predict for NP_001319787.1)
mito 5, other 4	(predict for NP_191352.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for AT3G57930	ath-u.5 for AT3G57930	ath-r.7 for AT3G57930	ath-m.9 for AT3G57930	ath-e.2 for AT3G57930	ath-m.4.hor for AT3G57930	ath-m.4.lig for AT3G57930	ath-m.4.str for AT3G57930	ath-m.4.tis for AT3G57930	ath-u.5 for AT2G42190	bra-r.6 for 103830127	bra-r.6 for 103863017	bra-r.6 for 103866614	bna-r.1 for 125574808	bna-r.1 for 111201404	bna-r.1 for 106353218	ghi-r.1 for 107948479	ghi-r.1 for 107961704	ghi-r.1 for 107924669	cit-r.1 for 102626868	cit-r.1 for 102609268	gma-u.5 for 100802389	gma-u.5 for 100797825	gma-u.5 for 100527546	vvi-u.5 for 100248625	vvi-u.5 for 100262168	ppo-u.5 for 112325732	ppo-u.5 for 7487050	ppo-u.5 for 18097262	mtr-u.5 for 11436331	mtr-u.5 for 11444222	sly-u.5 for 101264948	sly-u.5 for 101261472	sly-u.5 for 101251341	sot-r.1 for 102604651	sot-r.1 for 102595006	sot-r.1 for 102579056	nta-r.1 for 107815171	nta-r.1 for 107774614	nta-r.1 for 107782416	osa-u.5 for 4330527	osa-u.5 for 4340891	zma-u.5 for 100274203	zma-u.5 for 100272593	tae-r.2 for 123168900	tae-r.2 for 123152363	tae-r.2 for 123145292	hvu-r.1 for 123402381	hvu-r.1 for 123410211	sbi-r.1 for 8078255	bdi-r.1 for 100836557	bdi-r.1 for 100838669

Ortholog

Ortholog ID: 1700

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

rho GTPase-activating gacO-like protein

cilia- and flagella-associated protein 251

protein pxr1

uncharacterized LOC106353218

cilia- and flagella-associated protein 251

uncharacterized LOC107961704

uncharacterized LOC107922451

uncharacterized LOC107889958

hypothetical protein

uncharacterized LOC102609268

uncharacterized LOC100802389

uncharacterized LOC100499786

uncharacterized LOC100305938

protein HEAT INTOLERANT 4

uncharacterized LOC100262168

uncharacterized LOC112325732

uncharacterized LOC7487050

uncharacterized LOC18097262

uncharacterized LOC11436331

uncharacterized LOC11444222

uncharacterized LOC101264948

uncharacterized LOC101261472

uncharacterized LOC101251341

uncharacterized LOC102604651

uncharacterized LOC102595006

uncharacterized LOC102579056

uncharacterized LOC107815171

uncharacterized LOC107782416

uncharacterized LOC107805442

uncharacterized LOC4330527

pre-mRNA-processing protein 40A

uncharacterized LOC100274203

uncharacterized LOC103627653

uncharacterized LOC123145292

uncharacterized LOC123161152

uncharacterized LOC123128189

uncharacterized LOC123402381

uncharacterized LOC123410211

uncharacterized LOC8078255

uncharacterized LOC100836557

uncharacterized LOC100838669

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00196	Photosynthesis - antenna proteins	5
bra00860	Porphyrin metabolism	2
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03420	Nucleotide excision repair	2
cit03008	Ribosome biogenesis in eukaryotes	2
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	2
gma00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00480	Glutathione metabolism	2
vvi03015	mRNA surveillance pathway	2
vvi04136	Autophagy - other	2
vvi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04145	Phagosome	2
ppo04517	IgSF CAM signaling	2
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04145	Phagosome	2
ppo04517	IgSF CAM signaling	2
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04141	Protein processing in endoplasmic reticulum	4
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	3
sot00600	Sphingolipid metabolism	2
sot04382	Cornified envelope formation	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	4
osa04145	Phagosome	4
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	3
tae00030	Pentose phosphate pathway	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04517	IgSF CAM signaling	3
tae04814	Motor proteins	3
tae00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00010	Glycolysis / Gluconeogenesis	5
bdi01200	Carbon metabolism	4
bdi01230	Biosynthesis of amino acids	4
bdi00270	Cysteine and methionine metabolism	2
bdi00620	Pyruvate metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

824962

818819

103830127

103863017

103865928

106353218

106396944

106432090

107961704

107922451

107889958

102626868

102609268

100802389

100499786

100305938

100248625

100262168

112325732

7487050

18097262

11436331

11444222

101264948

101261472

101251341

102604651

102595006

102579056

107815171

107782416

107805442

4330527

4340891

100274203

103627653

123145292

123161152

123128189

123402381

123410211

8078255

100836557

100838669

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	2	3	2	3	2	3	3	3	2	2	3	2	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G57930 (ath-m.4.bio coexpression data)

Top 50 enrichment test to AT3G57930 (ath-m.4.bio coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**