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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   LD   Homeodomain-like superfamily protein 
 ath-u.5   LD   Homeodomain-like superfamily protein 
 ath-r.7   LD   Homeodomain-like superfamily protein 
 ath-m.9   LD   Homeodomain-like superfamily protein 
 ath-e.2   LD   Homeodomain-like superfamily protein 
 ath-m.4.hor   LD   Homeodomain-like superfamily protein 
 ath-m.4.lig   LD   Homeodomain-like superfamily protein 
 ath-m.4.str   LD   Homeodomain-like superfamily protein 
 ath-m.4.tis   LD   Homeodomain-like superfamily protein 
 bra-r.6   103868201   homeobox protein LUMINIDEPENDENS 
 bna-r.1   106426571   homeobox protein LUMINIDEPENDENS-like 
 bna-r.1   106401410   homeobox protein LUMINIDEPENDENS 
 bna-r.1   125596347   homeobox protein LUMINIDEPENDENS-like 
 ghi-r.1   107952065   homeobox protein LUMINIDEPENDENS 
 ghi-r.1   107913458   homeobox protein LUMINIDEPENDENS 
 cit-r.1   102612367   homeobox protein LUMINIDEPENDENS 
 gma-u.5   100780237   homeobox protein LUMINIDEPENDENS 
 gma-u.5   100806633   homeobox protein LUMINIDEPENDENS 
 vvi-u.5   100249358   homeobox protein LUMINIDEPENDENS 
 ppo-u.5   7491316   homeobox protein LUMINIDEPENDENS 
 ppo-u.5   18096466   homeobox protein LUMINIDEPENDENS 
 mtr-u.5   11433572   homeobox protein LUMINIDEPENDENS 
 sly-u.5   101260081   homeobox protein LUMINIDEPENDENS-like 
 sly-u.5   101255241   homeobox protein LUMINIDEPENDENS 
 sot-r.1   102604116   homeobox protein LUMINIDEPENDENS-like 
 sot-r.1   102603564   homeobox protein LUMINIDEPENDENS 
 nta-r.1   107774174   homeobox protein LUMINIDEPENDENS 
 nta-r.1   107796723   homeobox protein LUMINIDEPENDENS 
 osa-u.5   9267191   homeobox protein LUMINIDEPENDENS 
 zma-u.5   103650799   homeobox protein LUMINIDEPENDENS 
 tae-r.2   123063270   homeobox protein LUMINIDEPENDENS 
 tae-r.2   123072213   homeobox protein LUMINIDEPENDENS 
 tae-r.2   123080461   homeobox protein LUMINIDEPENDENS 
 hvu-r.1   123445357   homeobox protein LUMINIDEPENDENS 
 sbi-r.1   8059417   homeobox protein LUMINIDEPENDENS 
 bdi-r.1   100832034   homeobox protein LUMINIDEPENDENS 

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Top 50 coexpressed genes to LD (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LD (ath-m.4.bio coexpression data)

CoexMap"827904"


athLD | Entrez gene ID : 827904      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 1 2 2 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009911 [list] [network] positive regulation of flower development  (44 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190660.1 [sequence] [blastp]
NP_192165.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001190660.1)
nucl 9  (predict for NP_192165.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190660.1)
other 9  (predict for NP_192165.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
LD
ath-u.5
for
LD
ath-r.7
for
LD
ath-m.9
for
LD
ath-e.2
for
LD
ath-m.4.hor
for
LD
ath-m.4.lig
for
LD
ath-m.4.str
for
LD
ath-m.4.tis
for
LD
bra-r.6
for
103868201
bna-r.1
for
106426571
bna-r.1
for
106401410
bna-r.1
for
125596347
ghi-r.1
for
107952065
ghi-r.1
for
107913458
cit-r.1
for
102612367
gma-u.5
for
100780237
gma-u.5
for
100806633
vvi-u.5
for
100249358
ppo-u.5
for
7491316
ppo-u.5
for
18096466
mtr-u.5
for
11433572
sly-u.5
for
101260081
sly-u.5
for
101255241
sot-r.1
for
102604116
sot-r.1
for
102603564
nta-r.1
for
107774174
nta-r.1
for
107796723
osa-u.5
for
9267191
zma-u.5
for
103650799
tae-r.2
for
123063270
tae-r.2
for
123072213
tae-r.2
for
123080461
hvu-r.1
for
123445357
sbi-r.1
for
8059417
bdi-r.1
for
100832034


Ortholog ID: 8546
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LD LOC103868201 LOC106426571 LOC106401410 LOC125596347 LOC107952065 LOC107913458 LOC102612367 LOC100780237 LOC100806633 LOC100249358 LOC7491316 LOC18096466 LOC11433572 LOC101260081 LOC101255241 LOC102604116 LOC102603564 LOC107774174 LOC107796723 LOC9267191 LOC103650799 LOC123063270 LOC123072213 LOC123080461 LOC123445357 LOC8059417 LOC100832034
Function* Homeodomain-like superfamily protein homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS-like homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS-like homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS-like homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS-like homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS homeobox protein LUMINIDEPENDENS
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03013 Nucleocytoplasmic transport 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827904 103868201 106426571 106401410 125596347 107952065 107913458 102612367 100780237 100806633 100249358 7491316 18096466 11433572 101260081 101255241 102604116 102603564 107774174 107796723 9267191 103650799 123063270 123072213 123080461 123445357 8059417 100832034
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