ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	CBF1	C-repeat/DRE binding factor 1
ath-u.5	CBF1	C-repeat/DRE binding factor 1
ath-r.7	CBF1	C-repeat/DRE binding factor 1
ath-m.9	CBF1	C-repeat/DRE binding factor 1
ath-e.2	CBF1	C-repeat/DRE binding factor 1
ath-m.4.hor	CBF1	C-repeat/DRE binding factor 1
ath-m.4.lig	CBF1	C-repeat/DRE binding factor 1
ath-m.4.str	CBF1	C-repeat/DRE binding factor 1
ath-m.4.tis	CBF1	C-repeat/DRE binding factor 1
ath-u.5	DDF1	Integrase-type DNA-binding superfamily protein
bra-r.6	103857283	dehydration-responsive element-binding protein 1B
bra-r.6	103861560	dehydration-responsive element-binding protein 1C
bra-r.6	103838306	dehydration-responsive element-binding protein 1E
bna-r.1	106399526	dehydration-responsive element-binding protein 1F
bna-r.1	106360182	dehydration-responsive element-binding protein 1F
bna-r.1	106359887	dehydration-responsive element-binding protein 1B-like
ghi-r.1	107936392	dehydration-responsive element-binding protein 1E
ghi-r.1	107933919	dehydration-responsive element-binding protein 1A-like
ghi-r.1	107946998	dehydration-responsive element-binding protein 1B-like
cit-r.1	102610170	dehydration-responsive element-binding protein 1B-like
cit-r.1	102618196	dehydration-responsive element-binding protein 1D
cit-r.1	102622031	dehydration-responsive element-binding protein 1B-like
gma-u.5	100101894	dehydration-responsive element binding protein 7
gma-u.5	100819565	AP2-like DNA-binding domain-containing protein
vvi-u.5	CBF4	CBF4 transcription factor
sly-u.5	101263186	dehydration-responsive element-binding protein 1A
sly-u.5	CBF1	C-repeat-binding factor-1
sot-r.1	CBF3	AP2 domain CBF protein
sot-r.1	102577439	CBF2
nta-r.1	107778127	dehydration-responsive element-binding protein 1B-like
nta-r.1	142164254	dehydration-responsive element-binding protein 1A-like
nta-r.1	142164255	dehydration-responsive element-binding protein 1A-like
osa-u.5	4336721	dehydration-responsive element-binding protein 1E-like
osa-u.5	4330306	dehydration-responsive element-binding protein 1G-like
zma-u.5	100281239	dehydration-responsive element-binding protein 1D
zma-u.5	100284491	dehydration-responsive element-binding protein 1A
sbi-r.1	8076037	dehydration-responsive element-binding protein 1G
sbi-r.1	8060409	dehydration-responsive element-binding protein 1E
bdi-r.1	100845084	dehydration-responsive element-binding protein 1G

Annotation

functional annotation

KEGG

GO BP

GO:0009631 [list] [network] cold acclimation	(60 genes)	IEP IMP
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(262 genes)	IDA IGI
GO:0009414 [list] [network] response to water deprivation	(426 genes)	IEP
GO:0009409 [list] [network] response to cold	(436 genes)	IEP IMP TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0003677 [list] [network] DNA binding	(1274 genes)	IDA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_567721.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 3

(predict for NP_567721.1)

Subcellular
localization
TargetP

other 8

(predict for NP_567721.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for CBF1	ath-u.5 for CBF1	ath-r.7 for CBF1	ath-m.9 for CBF1	ath-e.2 for CBF1	ath-m.4.hor for CBF1	ath-m.4.lig for CBF1	ath-m.4.str for CBF1	ath-m.4.tis for CBF1	ath-u.5 for DDF1	bra-r.6 for 103857283	bra-r.6 for 103861560	bra-r.6 for 103838306	bna-r.1 for 106399526	bna-r.1 for 106360182	bna-r.1 for 106359887	ghi-r.1 for 107936392	ghi-r.1 for 107933919	ghi-r.1 for 107946998	cit-r.1 for 102610170	cit-r.1 for 102618196	cit-r.1 for 102622031	gma-u.5 for 100101894	gma-u.5 for 100819565	vvi-u.5 for CBF4	sly-u.5 for 101263186	sly-u.5 for CBF1	sot-r.1 for CBF3	sot-r.1 for 102577439	nta-r.1 for 107778127	nta-r.1 for 142164254	nta-r.1 for 142164255	osa-u.5 for 4336721	osa-u.5 for 4330306	zma-u.5 for 100281239	zma-u.5 for 100284491	sbi-r.1 for 8076037	sbi-r.1 for 8060409	bdi-r.1 for 100845084