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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   RVE1   Homeodomain-like superfamily protein 
 ath-u.5   RVE1   Homeodomain-like superfamily protein 
 ath-r.7   RVE1   Homeodomain-like superfamily protein 
 ath-m.9   RVE1   Homeodomain-like superfamily protein 
 ath-e.2   RVE1   Homeodomain-like superfamily protein 
 ath-m.4.hor   RVE1   Homeodomain-like superfamily protein 
 ath-m.4.lig   RVE1   Homeodomain-like superfamily protein 
 ath-m.4.str   RVE1   Homeodomain-like superfamily protein 
 ath-m.4.tis   RVE1   Homeodomain-like superfamily protein 
 ath-u.5   EPR1   Homeodomain-like superfamily protein 
 ath-u.5   RVE2   Homeodomain-like superfamily protein 
 ath-u.5   AT3G10113   Homeodomain-like superfamily protein 
 bra-r.6   103856239   protein REVEILLE 1 
 bra-r.6   103846255   protein REVEILLE 1 
 bra-r.6   103851098   protein REVEILLE 1 
 bna-r.1   111202817   protein REVEILLE 1-like 
 bna-r.1   111211014   protein REVEILLE 1 
 bna-r.1   111214517   protein REVEILLE 7-like 
 ghi-r.1   107904753   protein REVEILLE 7 
 ghi-r.1   107926642   protein REVEILLE 2 
 ghi-r.1   107953319   protein REVEILLE 7 
 cit-r.1   102630458   protein REVEILLE 1 
 cit-r.1   102614255   protein REVEILLE 7-like 
 gma-u.5   780539   protein REVEILLE 1 
 gma-u.5   778089   protein REVEILLE 7 
 gma-u.5   MYB177   MYB transcription factor MYB177 
 vvi-u.5   100263252   protein REVEILLE 1 
 ppo-u.5   18106485   protein REVEILLE 1 
 ppo-u.5   18105607   protein REVEILLE 7 
 ppo-u.5   7494524   protein REVEILLE 1 
 mtr-u.5   11427268   protein REVEILLE 1 
 mtr-u.5   25497345   protein REVEILLE 7 
 sly-u.5   101261079   protein REVEILLE 1 
 sly-u.5   101255972   protein REVEILLE 7 
 sot-r.1   102602066   protein REVEILLE 1 
 nta-r.1   107774404   protein REVEILLE 1 
 nta-r.1   107806142   uncharacterized LOC107806142 
 nta-r.1   107801057   protein REVEILLE 1-like 
 osa-u.5   4342135   protein REVEILLE 1 
 osa-u.5   4330349   protein REVEILLE 1 
 osa-u.5   4336779   uncharacterized LOC4336779 
 zma-u.5   100280442   uncharacterized LOC100280442 
 zma-u.5   100276850   uncharacterized LOC100276850 
 zma-u.5   100273616   uncharacterized LOC100273616 
 tae-r.2   123159960   protein LHY 
 tae-r.2   123046701   protein REVEILLE 7 
 tae-r.2   123054556   protein REVEILLE 7 
 hvu-r.1   123427840   protein REVEILLE 1-like 
 hvu-r.1   123407640   protein LHY-like 
 hvu-r.1   123401551   protein REVEILLE 1-like 
 sbi-r.1   110431210   uncharacterized LOC110431210 
 sbi-r.1   8073204   uncharacterized LOC8073204 
 sbi-r.1   8060442   uncharacterized LOC8060442 
 bdi-r.1   100829508   myb-like protein H 
 bdi-r.1   100837761   protein REVEILLE 2 
 bdi-r.1   100842816   protein REVEILLE 7-like 
 cre-r.1   CHLRE_06g275350v5   uncharacterized protein 

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Top 50 coexpressed genes to RVE1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RVE1 (ath-m.4.bio coexpression data)

CoexMap"831595"


athRVE1 | Entrez gene ID : 831595      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 2 3 1 3 2 2 1 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010600 [list] [network] regulation of auxin biosynthetic process  (17 genes)  IMP  
GO:0009851 [list] [network] auxin biosynthetic process  (26 genes)  IMP  
GO:0009734 [list] [network] auxin-activated signaling pathway  (65 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001332234.1 [sequence] [blastp]
NP_568344.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  plas 1,  golg_plas 1  (predict for NP_001332234.1)
nucl 9  (predict for NP_568344.2)
Subcellular
localization
TargetP
other 4  (predict for NP_001332234.1)
other 7,  mito 3  (predict for NP_568344.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
RVE1
ath-u.5
for
RVE1
ath-r.7
for
RVE1
ath-m.9
for
RVE1
ath-e.2
for
RVE1
ath-m.4.hor
for
RVE1
ath-m.4.lig
for
RVE1
ath-m.4.str
for
RVE1
ath-m.4.tis
for
RVE1
ath-u.5
for
EPR1
ath-u.5
for
RVE2
ath-u.5
for
AT3G10113
bra-r.6
for
103856239
bra-r.6
for
103846255
bra-r.6
for
103851098
bna-r.1
for
111202817
bna-r.1
for
111211014
bna-r.1
for
111214517
ghi-r.1
for
107904753
ghi-r.1
for
107926642
ghi-r.1
for
107953319
cit-r.1
for
102630458
cit-r.1
for
102614255
gma-u.5
for
780539
gma-u.5
for
778089
gma-u.5
for
MYB177
vvi-u.5
for
100263252
ppo-u.5
for
18106485
ppo-u.5
for
18105607
ppo-u.5
for
7494524
mtr-u.5
for
11427268
mtr-u.5
for
25497345
sly-u.5
for
101261079
sly-u.5
for
101255972
sot-r.1
for
102602066
nta-r.1
for
107774404
nta-r.1
for
107806142
nta-r.1
for
107801057
osa-u.5
for
4342135
osa-u.5
for
4330349
osa-u.5
for
4336779
zma-u.5
for
100280442
zma-u.5
for
100276850
zma-u.5
for
100273616
tae-r.2
for
123159960
tae-r.2
for
123046701
tae-r.2
for
123054556
hvu-r.1
for
123427840
hvu-r.1
for
123407640
hvu-r.1
for
123401551
sbi-r.1
for
110431210
sbi-r.1
for
8073204
sbi-r.1
for
8060442
bdi-r.1
for
100829508
bdi-r.1
for
100837761
bdi-r.1
for
100842816
cre-r.1
for
CHLRE_06g275350v5


Ortholog ID: 1576
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo ppo mtr mtr sly sly sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol RVE1 EPR1 RVE2 LOC103846255 LOC103851098 EPR1 LOC111202817 LOC111211014 LOC106387719 LOC107926642 LOC107953319 LOC121211262 LOC102630458 LOC102614255 LOC778089 MYB177 MYB173 LOC100263252 LOC18106485 LOC18105607 LOC7485192 LOC11427268 LOC25497345 LOC101261079 LOC101255972 LOC102602066 LOC107796078 LOC107784585 LOC107812899 LOC4342135 LOC4330349 LOC4336779 LOC100276850 LOC100273483 LOC100279070 LOC123046701 LOC123190414 LOC100873110 LOC123427840 LOC123407640 LOC123401551 LOC110431210 LOC8073204 LOC8060442 LOC100829508 LOC100837761 LOC100842816 CHLRE_06g275350v5
Function* Homeodomain-like superfamily protein Homeodomain-like superfamily protein Homeodomain-like superfamily protein protein REVEILLE 1 protein REVEILLE 1 protein REVEILLE 7 protein REVEILLE 1-like protein REVEILLE 1 protein REVEILLE 1 protein REVEILLE 2 protein REVEILLE 7 protein REVEILLE 7 protein REVEILLE 1 protein REVEILLE 7-like protein REVEILLE 7 MYB transcription factor MYB177 MYB transcription factor MYB173 protein REVEILLE 1 protein REVEILLE 1 protein REVEILLE 7 protein REVEILLE 7 protein REVEILLE 1 protein REVEILLE 7 protein REVEILLE 1 protein REVEILLE 7 protein REVEILLE 1 uncharacterized LOC107796078 protein REVEILLE 1 uncharacterized LOC107812899 protein REVEILLE 1 protein REVEILLE 1 uncharacterized LOC4336779 uncharacterized LOC100276850 uncharacterized LOC100273483 uncharacterized LOC100279070 protein REVEILLE 7 protein REVEILLE 2 protein REVEILLE 1 protein REVEILLE 1-like protein LHY-like protein REVEILLE 1-like uncharacterized LOC110431210 uncharacterized LOC8073204 uncharacterized LOC8060442 myb-like protein H protein REVEILLE 2 protein REVEILLE 7-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 3
mtr00270 Cysteine and methionine metabolism 2
mtr00330 Arginine and proline metabolism 2
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831595 838413 833700 103846255 103851098 103872597 111202817 111211014 106387719 107926642 107953319 121211262 102630458 102614255 778089 778060 778058 100263252 18106485 18105607 7485192 11427268 25497345 101261079 101255972 102602066 107796078 107784585 107812899 4342135 4330349 4336779 100276850 100273483 100279070 123046701 123190414 100873110 123427840 123407640 123401551 110431210 8073204 8060442 100829508 100837761 100842816 5721757
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