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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-u.5   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-r.7   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.9   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-e.2   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.hor   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.lig   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.str   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.tis   RIN1   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 bra-r.6   103851434   ruvB-like protein 1 
 bra-r.6   103845554   ruvB-like protein 1 
 bna-r.1   106419548   ruvB-like protein 1 
 bna-r.1   106371658   ruvB-like protein 1 
 bna-r.1   106384702   ruvB-like protein 1 
 ghi-r.1   107959211   ruvB-like protein 1 
 ghi-r.1   107902779   ruvB-like protein 1 
 ghi-r.1   107891536   ruvB-like protein 1 
 cit-r.1   102608634   ruvB-like protein 1 
 gma-u.5   100809596   ruvB-like protein 1 
 gma-u.5   102659805   ruvB-like protein 1 
 vvi-u.5   100262179   ruvB-like protein 1 
 ppo-u.5   18098083   ruvB-like protein 1 
 ppo-u.5   7478571   ruvB-like protein 1 
 mtr-u.5   11435218   ruvB-like protein 1 
 sly-u.5   101256745   ruvB-like protein 1 
 sly-u.5   101264735   ruvB-like protein 1 
 sot-r.1   102579037   ruvB-like protein 1 
 sot-r.1   102584723   ruvB-like protein 1 
 nta-r.1   107795284   ruvB-like protein 1 
 nta-r.1   107824339   ruvB-like protein 1 
 osa-u.5   4327368   ruvB-like protein 1 
 osa-u.5   4342553   ruvB-like protein 1 
 zma-u.5   100191624   RuvB-like protein 1 
 zma-u.5   100272912   uncharacterized LOC100272912 
 tae-r.2   123095830   ruvB-like protein 1 
 tae-r.2   123068388   ruvB-like protein 1 
 tae-r.2   123059914   ruvB-like protein 1 
 hvu-r.1   123449672   ruvB-like protein 1 
 sbi-r.1   8057503   ruvB-like protein 1 
 sbi-r.1   8085442   ruvB-like protein 1 
 bdi-r.1   100835511   ruvB-like protein 1 
 cre-r.1   CHLRE_09g414050v5   uncharacterized protein 

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Top 50 coexpressed genes to RIN1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RIN1 (ath-m.4.bio coexpression data)

CoexMap"832293"


athRIN1 | Entrez gene ID : 832293      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 2 2 2 2 2 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:1905323 [list] [network] telomerase holoenzyme complex assembly  (1 genes)  IMP  
GO:1900150 [list] [network] regulation of defense response to fungus  (39 genes)  IMP  
GO:0048507 [list] [network] meristem development  (276 genes)  IMP  
GO CC
GO:0000812 [list] [network] Swr1 complex  (13 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_197625.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  E.R. 1,  chlo_mito 1  (predict for NP_197625.1)
Subcellular
localization
TargetP
other 9  (predict for NP_197625.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
RIN1
ath-u.5
for
RIN1
ath-r.7
for
RIN1
ath-m.9
for
RIN1
ath-e.2
for
RIN1
ath-m.4.hor
for
RIN1
ath-m.4.lig
for
RIN1
ath-m.4.str
for
RIN1
ath-m.4.tis
for
RIN1
bra-r.6
for
103851434
bra-r.6
for
103845554
bna-r.1
for
106419548
bna-r.1
for
106371658
bna-r.1
for
106384702
ghi-r.1
for
107959211
ghi-r.1
for
107902779
ghi-r.1
for
107891536
cit-r.1
for
102608634
gma-u.5
for
100809596
gma-u.5
for
102659805
vvi-u.5
for
100262179
ppo-u.5
for
18098083
ppo-u.5
for
7478571
mtr-u.5
for
11435218
sly-u.5
for
101256745
sly-u.5
for
101264735
sot-r.1
for
102579037
sot-r.1
for
102584723
nta-r.1
for
107795284
nta-r.1
for
107824339
osa-u.5
for
4327368
osa-u.5
for
4342553
zma-u.5
for
100191624
zma-u.5
for
100272912
tae-r.2
for
123095830
tae-r.2
for
123068388
tae-r.2
for
123059914
hvu-r.1
for
123449672
sbi-r.1
for
8057503
sbi-r.1
for
8085442
bdi-r.1
for
100835511
cre-r.1
for
CHLRE_09g414050v5


Ortholog ID: 4619
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi cre
Symbol RIN1 LOC103851434 LOC103845554 LOC106419548 LOC106371658 LOC106384702 LOC107902779 LOC107891536 LOC107889188 LOC102608634 LOC100809596 LOC102659805 LOC100262179 LOC18098083 LOC7478571 LOC11435218 LOC101256745 LOC101264735 LOC102579037 LOC102584723 LOC107795284 LOC107824339 LOC4327368 LOC4342553 LOC100191624 LOC100272912 LOC123095830 LOC123076932 LOC123087141 LOC123449672 LOC8057503 LOC8085442 LOC100835511 CHLRE_09g414050v5
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 RuvB-like protein 1 uncharacterized LOC100272912 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 ruvB-like protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 6
ghi03082 ATP-dependent chromatin remodeling 4
ghi00260 Glycine, serine and threonine metabolism 3
ghi00460 Cyanoamino acid metabolism 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi00260 Glycine, serine and threonine metabolism 3
ghi00460 Cyanoamino acid metabolism 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi00260 Glycine, serine and threonine metabolism 3
ghi00460 Cyanoamino acid metabolism 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma01230 Biosynthesis of amino acids 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 2
gma03018 RNA degradation 2
gma03013 Nucleocytoplasmic transport 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03010 Ribosome 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 3
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot00230 Purine metabolism 2
sot03082 ATP-dependent chromatin remodeling 2
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00908 Zeatin biosynthesis 3
nta03082 ATP-dependent chromatin remodeling 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 3
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03082 ATP-dependent chromatin remodeling 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04141 Protein processing in endoplasmic reticulum 3
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832293 103851434 103845554 106419548 106371658 106384702 107902779 107891536 107889188 102608634 100809596 102659805 100262179 18098083 7478571 11435218 101256745 101264735 102579037 102584723 107795284 107824339 4327368 4342553 100191624 100272912 123095830 123076932 123087141 123449672 8057503 8085442 100835511 5722339
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