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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   HDA7   histone deacetylase7 
 ath-m.9   HDA7   histone deacetylase7 
 ath-m.4.hor   HDA7   histone deacetylase7 
 ath-m.4.lig   HDA7   histone deacetylase7 
 ath-m.4.str   HDA7   histone deacetylase7 
 ath-m.4.tis   HDA7   histone deacetylase7 
 ath-u.5   HDA6   histone deacetylase 6 
 bra-r.6   103873731   histone deacetylase 6 
 bra-r.6   103837453   histone deacetylase 6 
 bna-r.1   106422589   histone deacetylase 6 
 bna-r.1   106411141   histone deacetylase 6-like 
 bna-r.1   106362718   histone deacetylase 6-like 
 ghi-r.1   107886255   histone deacetylase 6 
 ghi-r.1   107949697   histone deacetylase 6 
 cit-r.1   102617679   histone deacetylase 6 
 gma-u.5   HDA16   histone deacetylase 
 gma-u.5   HDA7   histone deacetylase 
 gma-u.5   HDA3   histone deacetylase 
 vvi-u.5   100244903   histone deacetylase 6 
 ppo-u.5   7456903   histone deacetylase 6 
 ppo-u.5   7453794   histone deacetylase 6 
 mtr-u.5   11414050   histone deacetylase 6 
 sly-u.5   HDA3   histone deacetylase 
 sly-u.5   101256864   histone deacetylase 6-like 
 sot-r.1   102587267   histone deacetylase 6-like 
 sot-r.1   102605718   histone deacetylase 6 
 nta-r.1   107830951   histone deacetylase 6 
 osa-u.5   4345332   histone deacetylase 6 
 zma-u.5   HDA108   histone deacetylase 108 
 tae-r.2   123144362   histone deacetylase 6 
 tae-r.2   123136940   histone deacetylase 6 
 tae-r.2   543173   histone deacetylase 6 
 hvu-r.1   123402944   histone deacetylase 6 
 sbi-r.1   8073075   histone deacetylase 6 
 bdi-r.1   100834631   histone deacetylase 6 

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Top 50 coexpressed genes to HDA7 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HDA7 (ath-m.4.bio coexpression data)

CoexMap"833525"


athHDA7 | Entrez gene ID : 833525      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 7 2 3 2 1 3 1 2 1 2 2 1 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (17 genes)  ISS  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  ISS  
Protein NP_198410.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  pero 2,  mito 1  (predict for NP_198410.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for NP_198410.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
HDA7
ath-m.9
for
HDA7
ath-m.4.hor
for
HDA7
ath-m.4.lig
for
HDA7
ath-m.4.str
for
HDA7
ath-m.4.tis
for
HDA7
ath-u.5
for
HDA6
bra-r.6
for
103873731
bra-r.6
for
103837453
bna-r.1
for
106422589
bna-r.1
for
106411141
bna-r.1
for
106362718
ghi-r.1
for
107886255
ghi-r.1
for
107949697
cit-r.1
for
102617679
gma-u.5
for
HDA16
gma-u.5
for
HDA7
gma-u.5
for
HDA3
vvi-u.5
for
100244903
ppo-u.5
for
7456903
ppo-u.5
for
7453794
mtr-u.5
for
11414050
sly-u.5
for
HDA3
sly-u.5
for
101256864
sot-r.1
for
102587267
sot-r.1
for
102605718
nta-r.1
for
107830951
osa-u.5
for
4345332
zma-u.5
for
HDA108
tae-r.2
for
123144362
tae-r.2
for
123136940
tae-r.2
for
543173
hvu-r.1
for
123402944
sbi-r.1
for
8073075
bdi-r.1
for
100834631


Ortholog ID: 6361
Species ath bra bra bna bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol HDA6 LOC103873731 LOC103837453 LOC106422589 LOC106362718 LOC106347870 LOC107886255 LOC107949697 LOC102617679 HDA16 HDA7 HDA3 LOC100244903 LOC7456903 LOC7453794 LOC11414050 HDA3 LOC101256864 LOC102587267 LOC102605718 LOC107830951 LOC107828384 LOC4345332 HDA108 LOC123144362 LOC123136940 LOC543173 LOC123402944 LOC8073075 LOC100834631
Function* histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6-like histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase histone deacetylase histone deacetylase histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase histone deacetylase 6-like histone deacetylase 6-like histone deacetylase 6 histone deacetylase 6 histone deacetylase 6-like histone deacetylase 6 histone deacetylase 108 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra04141 Protein processing in endoplasmic reticulum 4
bra01210 2-Oxocarboxylic acid metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 4
gma03018 RNA degradation 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03083 Polycomb repressive complex 3
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma03082 ATP-dependent chromatin remodeling 3
gma03083 Polycomb repressive complex 3
gma04075 Plant hormone signal transduction 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 5
mtr03083 Polycomb repressive complex 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 3
sbi03083 Polycomb repressive complex 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836431 103873731 103837453 106422589 106362718 106347870 107886255 107949697 102617679 100819221 100807923 100801159 100244903 7456903 7453794 11414050 101258377 101256864 102587267 102605718 107830951 107828384 4345332 541681 123144362 123136940 543173 123402944 8073075 100834631
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