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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   CRL   crumpled leaf 
 ath-u.5   CRL   crumpled leaf 
 ath-r.7   CRL   crumpled leaf 
 ath-m.9   CRL   crumpled leaf 
 ath-e.2   CRL   crumpled leaf 
 ath-m.4.hor   CRL   crumpled leaf 
 ath-m.4.lig   CRL   crumpled leaf 
 ath-m.4.str   CRL   crumpled leaf 
 ath-m.4.tis   CRL   crumpled leaf 
 bra-r.6   103862882   chromophore lyase CRL, chloroplastic 
 bna-r.1   106346559   chromophore lyase CRL, chloroplastic 
 bna-r.1   106442533   chromophore lyase CRL, chloroplastic 
 ghi-r.1   107886179   chromophore lyase CRL, chloroplastic 
 ghi-r.1   121209645   chromophore lyase CRL, chloroplastic 
 ghi-r.1   107949626   chromophore lyase CRL, chloroplastic 
 cit-r.1   102620004   chromophore lyase CRL, chloroplastic 
 gma-u.5   100800615   chromophore lyase CRL, chloroplastic 
 gma-u.5   100796592   chromophore lyase CRL, chloroplastic 
 vvi-u.5   100264699   chromophore lyase CRL, chloroplastic 
 ppo-u.5   7484896   chromophore lyase CRL, chloroplastic 
 mtr-u.5   11425570   chromophore lyase CRL, chloroplastic 
 sly-u.5   101249651   chromophore lyase CRL, chloroplastic 
 sot-r.1   102588453   chromophore lyase CRL, chloroplastic 
 nta-r.1   107793916   chromophore lyase CRL, chloroplastic 
 nta-r.1   107760088   chromophore lyase CRL, chloroplastic 
 osa-u.5   4350611   chromophore lyase CRL, chloroplastic 
 zma-u.5   100382707   uncharacterized LOC100382707 
 tae-r.2   123086054   chromophore lyase CRL, chloroplastic 
 tae-r.2   123092022   chromophore lyase CRL, chloroplastic 
 hvu-r.1   123448554   chromophore lyase CRL, chloroplastic 
 sbi-r.1   8059625   chromophore lyase CRL, chloroplastic 
 sbi-r.1   8064788   chromophore lyase CRL, chloroplastic 
 bdi-r.1   100832692   chromophore lyase CRL, chloroplastic 

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Top 50 coexpressed genes to CRL (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRL (ath-m.4.bio coexpression data)

CoexMap"835175"


athCRL | Entrez gene ID : 835175    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0098586 [list] [network] cellular response to virus  (1 genes)  IDA  
GO:0046741 [list] [network] transport of virus in host, tissue to tissue  (3 genes)  IMP  
GO:0010020 [list] [network] chloroplast fission  (21 genes)  IMP  
GO:0043572 [list] [network] plastid fission  (21 genes)  IMP  
GO:0051302 [list] [network] regulation of cell division  (78 genes)  IMP  
GO:0000302 [list] [network] response to reactive oxygen species  (142 genes)  IMP  
GO CC
GO:0009707 [list] [network] chloroplast outer membrane  (46 genes)  IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_199915.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  extr 2,  E.R._vacu 2,  cyto_E.R. 2  (predict for NP_199915.1)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for NP_199915.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
CRL
ath-u.5
for
CRL
ath-r.7
for
CRL
ath-m.9
for
CRL
ath-e.2
for
CRL
ath-m.4.hor
for
CRL
ath-m.4.lig
for
CRL
ath-m.4.str
for
CRL
ath-m.4.tis
for
CRL
bra-r.6
for
103862882
bna-r.1
for
106346559
bna-r.1
for
106442533
ghi-r.1
for
107886179
ghi-r.1
for
121209645
ghi-r.1
for
107949626
cit-r.1
for
102620004
gma-u.5
for
100800615
gma-u.5
for
100796592
vvi-u.5
for
100264699
ppo-u.5
for
7484896
mtr-u.5
for
11425570
sly-u.5
for
101249651
sot-r.1
for
102588453
nta-r.1
for
107793916
nta-r.1
for
107760088
osa-u.5
for
4350611
zma-u.5
for
100382707
tae-r.2
for
123086054
tae-r.2
for
123092022
hvu-r.1
for
123448554
sbi-r.1
for
8059625
sbi-r.1
for
8064788
bdi-r.1
for
100832692


Ortholog ID: 9729
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi sbi bdi
Symbol CRL LOC103862882 LOC106346559 LOC106442533 LOC107886179 LOC121209645 LOC107949626 LOC102620004 LOC100800615 LOC100796592 LOC100264699 LOC7484896 LOC11425570 LOC101249651 LOC102588453 LOC107793916 LOC107760088 LOC4350611 LOC100382707 LOC123086054 LOC123092022 LOC123448554 LOC8059625 LOC8064788 LOC100832692
Function* crumpled leaf chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic uncharacterized LOC100382707 chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic chromophore lyase CRL, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03008 Ribosome biogenesis in eukaryotes 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00564 Glycerophospholipid metabolism 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00670 One carbon pool by folate 4
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835175 103862882 106346559 106442533 107886179 121209645 107949626 102620004 100800615 100796592 100264699 7484896 11425570 101249651 102588453 107793916 107760088 4350611 100382707 123086054 123092022 123448554 8059625 8064788 100832692
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