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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-u.5   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-r.7   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-m.9   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-e.2   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-m.4.hor   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-m.4.lig   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-m.4.str   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 ath-m.4.tis   TWN2   valyl-tRNA synthetase / valine-tRNA ligase (VALRS) 
 bra-r.6   103836066   valine--tRNA ligase, mitochondrial 1 
 bra-r.6   103842956   valine--tRNA ligase, mitochondrial 1 
 bra-r.6   103872259   valine--tRNA ligase, mitochondrial 1 
 bna-r.1   106432392   valine--tRNA ligase, mitochondrial 1 
 bna-r.1   106346598   valine--tRNA ligase, mitochondrial 1 
 bna-r.1   106415327   valine--tRNA ligase, mitochondrial 1 
 ghi-r.1   107926245   valine--tRNA ligase, mitochondrial 1 
 ghi-r.1   107919858   valine--tRNA ligase, mitochondrial 1 
 cit-r.1   102619798   valine--tRNA ligase, mitochondrial 1 
 gma-u.5   100798111   valine--tRNA ligase, mitochondrial 1 
 vvi-u.5   100257207   valine--tRNA ligase, mitochondrial 1 
 ppo-u.5   7477145   valine--tRNA ligase, mitochondrial 1 
 ppo-u.5   7465570   valine--tRNA ligase, mitochondrial 1 
 mtr-u.5   11414665   valine--tRNA ligase, mitochondrial 1 
 sly-u.5   101250918   valine--tRNA ligase, mitochondrial 1 
 sot-r.1   102590606   valine--tRNA ligase, mitochondrial 1 
 nta-r.1   107831446   valine--tRNA ligase, mitochondrial 1 
 nta-r.1   107793466   valine--tRNA ligase, mitochondrial 1 
 nta-r.1   107786830   valine--tRNA ligase, mitochondrial 1 
 osa-u.5   9267455   valine--tRNA ligase, mitochondrial 1 
 osa-u.5   4332758   valine--tRNA ligase, mitochondrial 1 
 osa-u.5   4333799   valine--tRNA ligase, mitochondrial 1 
 zma-u.5   103641233   valine--tRNA ligase, mitochondrial 1 
 zma-u.5   100383209   uncharacterized LOC100383209 
 tae-r.2   123060467   valine--tRNA ligase, mitochondrial 1 
 tae-r.2   123181183   valine--tRNA ligase, mitochondrial 1 
 tae-r.2   123125365   valine--tRNA ligase, mitochondrial 1 
 hvu-r.1   123442992   valine--tRNA ligase, mitochondrial 1-like 
 hvu-r.1   123433853   valine--tRNA ligase, mitochondrial 1-like 
 sbi-r.1   8080871   valine--tRNA ligase, mitochondrial 1 
 bdi-r.1   100840825   valine--tRNA ligase, mitochondrial 1 
 cre-r.1   CHLRE_12g537100v5   uncharacterized protein 

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Top 50 coexpressed genes to TWN2 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TWN2 (ath-m.4.bio coexpression data)

CoexMap"838023"


athTWN2 | Entrez gene ID : 838023      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 2 1 1 1 2 1 1 1 3 3 2 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00970 [list] [network] Aminoacyl-tRNA biosynthesis (713 genes)
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
Protein NP_172913.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for NP_172913.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_172913.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
TWN2
ath-u.5
for
TWN2
ath-r.7
for
TWN2
ath-m.9
for
TWN2
ath-e.2
for
TWN2
ath-m.4.hor
for
TWN2
ath-m.4.lig
for
TWN2
ath-m.4.str
for
TWN2
ath-m.4.tis
for
TWN2
bra-r.6
for
103836066
bra-r.6
for
103842956
bra-r.6
for
103872259
bna-r.1
for
106432392
bna-r.1
for
106346598
bna-r.1
for
106415327
ghi-r.1
for
107926245
ghi-r.1
for
107919858
cit-r.1
for
102619798
gma-u.5
for
100798111
vvi-u.5
for
100257207
ppo-u.5
for
7477145
ppo-u.5
for
7465570
mtr-u.5
for
11414665
sly-u.5
for
101250918
sot-r.1
for
102590606
nta-r.1
for
107831446
nta-r.1
for
107793466
nta-r.1
for
107786830
osa-u.5
for
9267455
osa-u.5
for
4332758
osa-u.5
for
4333799
zma-u.5
for
103641233
zma-u.5
for
100383209
tae-r.2
for
123060467
tae-r.2
for
123181183
tae-r.2
for
123125365
hvu-r.1
for
123442992
hvu-r.1
for
123433853
sbi-r.1
for
8080871
bdi-r.1
for
100840825
cre-r.1
for
CHLRE_12g537100v5


Ortholog ID: 5405
Species ath bra bra bna bna bna ghi ghi cit gma vvi ppo ppo mtr sly sot nta nta nta osa osa osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol TWN2 LOC103842956 LOC103872259 LOC106432392 LOC106346598 LOC106401220 LOC107926245 LOC107919858 LOC102619798 LOC100798111 LOC100257207 LOC7477145 LOC7465570 LOC11414665 LOC101250918 LOC102590606 LOC107831446 LOC107793466 LOC107786830 LOC9267455 LOC4332758 LOC4333799 LOC103641233 LOC100383209 LOC123181183 LOC123125365 LOC123069018 LOC123442992 LOC123433853 LOC8080871 LOC100840825 CHLRE_12g537100v5
Function* valyl-tRNA synthetase / valine-tRNA ligase (VALRS) valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1-like valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 uncharacterized LOC100383209 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1-like valine--tRNA ligase, mitochondrial 1-like valine--tRNA ligase, mitochondrial 1 valine--tRNA ligase, mitochondrial 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 5
ath03040 Spliceosome 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 8
bra03010 Ribosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 8
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00240 Pyrimidine metabolism 2
mtr01240 Biosynthesis of cofactors 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03018 RNA degradation 2
sly03013 Nucleocytoplasmic transport 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 10
tae00531 Glycosaminoglycan degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 11
tae00450 Selenocompound metabolism 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 10
tae00450 Selenocompound metabolism 5
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 5
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
cre00970 Aminoacyl-tRNA biosynthesis 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838023 103842956 103872259 106432392 106346598 106401220 107926245 107919858 102619798 100798111 100257207 7477145 7465570 11414665 101250918 102590606 107831446 107793466 107786830 9267455 4332758 4333799 103641233 100383209 123181183 123125365 123069018 123442992 123433853 8080871 100840825 5718473
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