ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	CAT1	catalase 1
ath-u.5	CAT1	catalase 1
ath-r.7	CAT1	catalase 1
ath-m.9	CAT1	catalase 1
ath-e.2	CAT1	catalase 1
ath-m.4.hor	CAT1	catalase 1
ath-m.4.lig	CAT1	catalase 1
ath-m.4.str	CAT1	catalase 1
ath-m.4.tis	CAT1	catalase 1
ath-u.5	CAT3	catalase 3
ath-u.5	CAT2	catalase 2
bra-r.6	103829420	catalase-3-like
bra-r.6	103829418	catalase-1
bra-r.6	103831878	catalase-2
bna-r.1	111210255	catalase-1-like
bna-r.1	111198594	catalase-3-like
bna-r.1	111207793	catalase-2-like
ghi-r.1	107905725	catalase isozyme 1-like
ghi-r.1	107917962	catalase isozyme 1-like
ghi-r.1	107922122	catalase isozyme 1
cit-r.1	102616866	catalase isozyme 1
cit-r.1	102615999	catalase-like
gma-u.5	CAT1	catalase
gma-u.5	CAT3	catalase
gma-u.5	CAT4	catalase
vvi-u.5	GCAT	catalase
vvi-u.5	100244516	catalase isozyme 1
ppo-u.5	7496858	catalase isozyme 1
ppo-u.5	7494699	catalase isozyme 1
ppo-u.5	7492123	catalase-2
mtr-u.5	25490307	catalase-4
sly-u.5	101259333	catalase isozyme 3
sly-u.5	CAT2	catalase 2
sly-u.5	cat1	catalase
sot-r.1	102598238	catalase isozyme 3
sot-r.1	CAT1	catalase
sot-r.1	102577720	catalase isozyme 2
nta-r.1	107826360	catalase isozyme 1-like
nta-r.1	107759410	catalase isozyme 3
nta-r.1	107767654	catalase isozyme 3
osa-u.5	4328073	catalase isozyme A-like
osa-u.5	4342124	catalase isozyme B-like
osa-u.5	4331509	catalase isozyme C
zma-u.5	542370	catalase-3 (AA 1-495)
zma-u.5	542230	catalase 2
zma-u.5	542369	catalase 1
tae-r.2	123098877	catalase-1-like
tae-r.2	123105808	catalase-1-like
tae-r.2	123131745	catalase isozyme 2
hvu-r.1	123449777	catalase-1
hvu-r.1	123407150	catalase isozyme 1
sbi-r.1	8068221	catalase isozyme 3
sbi-r.1	8069231	catalase isozyme 1
sbi-r.1	110430724	catalase isozyme 2
bdi-r.1	100839582	catalase isozyme 1
bdi-r.1	100846426	catalase isozyme 2
bdi-r.1	100826491	catalase-1
cre-r.1	CHLRE_09g417150v5	uncharacterized protein

Top 50 coexpressed genes to CAT1 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CAT1 (ath-m.4.bio coexpression data)

CoexMap"838652"

[Cytoscape]

Annotation

functional annotation

KEGG

ath00380 [list] [network] Tryptophan metabolism (64 genes)

ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (81 genes)

ath01200 [list] [network] Carbon metabolism (275 genes)

ath04016 [list] [network] MAPK signaling pathway - plant (146 genes)

ath04146 [list] [network] Peroxisome (90 genes)

GO BP

GO:0042744 [list] [network] hydrogen peroxide catabolic process	(13 genes)	IGI
GO:0009970 [list] [network] cellular response to sulfate starvation	(20 genes)	IEP
GO:0098869 [list] [network] cellular oxidant detoxification	(26 genes)	ISS
GO:0006995 [list] [network] cellular response to nitrogen starvation	(28 genes)	IEP
GO:0042542 [list] [network] response to hydrogen peroxide	(63 genes)	IEP
GO:0016036 [list] [network] cellular response to phosphate starvation	(116 genes)	IEP
GO:0009737 [list] [network] response to abscisic acid	(550 genes)	IEP
GO:0009416 [list] [network] response to light stimulus	(776 genes)	IEP

GO CC

GO:0022626 [list] [network] cytosolic ribosome	(295 genes)	HDA
GO:0005777 [list] [network] peroxisome	(313 genes)	HDA TAS
GO:0009505 [list] [network] plant-type cell wall	(504 genes)	HDA
GO:0009941 [list] [network] chloroplast envelope	(585 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA RCA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	HDA ISM

GO MF

GO:0004096 [list] [network] catalase activity	(3 genes)	ISS
GO:0050897 [list] [network] cobalt ion binding	(44 genes)	HDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_564121.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, pero 4, cyto_pero 4

(predict for NP_564121.1)

Subcellular
localization
TargetP

other 6

(predict for NP_564121.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for CAT1	ath-u.5 for CAT1	ath-r.7 for CAT1	ath-m.9 for CAT1	ath-e.2 for CAT1	ath-m.4.hor for CAT1	ath-m.4.lig for CAT1	ath-m.4.str for CAT1	ath-m.4.tis for CAT1	ath-u.5 for CAT3	ath-u.5 for CAT2	bra-r.6 for 103829420	bra-r.6 for 103829418	bra-r.6 for 103831878	bna-r.1 for 111210255	bna-r.1 for 111198594	bna-r.1 for 111207793	ghi-r.1 for 107905725	ghi-r.1 for 107917962	ghi-r.1 for 107922122	cit-r.1 for 102616866	cit-r.1 for 102615999	gma-u.5 for CAT1	gma-u.5 for CAT3	gma-u.5 for CAT4	vvi-u.5 for GCAT	vvi-u.5 for 100244516	ppo-u.5 for 7496858	ppo-u.5 for 7494699	ppo-u.5 for 7492123	mtr-u.5 for 25490307	sly-u.5 for 101259333	sly-u.5 for CAT2	sly-u.5 for cat1	sot-r.1 for 102598238	sot-r.1 for CAT1	sot-r.1 for 102577720	nta-r.1 for 107826360	nta-r.1 for 107759410	nta-r.1 for 107767654	osa-u.5 for 4328073	osa-u.5 for 4342124	osa-u.5 for 4331509	zma-u.5 for 542370	zma-u.5 for 542230	zma-u.5 for 542369	tae-r.2 for 123098877	tae-r.2 for 123105808	tae-r.2 for 123131745	hvu-r.1 for 123449777	hvu-r.1 for 123407150	sbi-r.1 for 8068221	sbi-r.1 for 8069231	sbi-r.1 for 110430724	bdi-r.1 for 100839582	bdi-r.1 for 100846426	bdi-r.1 for 100826491	cre-r.1 for CHLRE_09g417150v5

Ortholog

Ortholog ID: 1397

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CAT1

CAT3

CAT2

CAT1

CAT3

CAT5

GCAT

CAT2

cat1

CAT1

Function^*

catalase 1

catalase 3

catalase 2

catalase-2

catalase-3

catalase-1-like

catalase-3

catalase-2

catalase isozyme 1-like

catalase isozyme 2-like

catalase isozyme 2

catalase isozyme 1

catalase-like

catalase

catalase isozyme 1

catalase-2

catalase-4

catalase isozyme 3

catalase 2

catalase

catalase isozyme 3

catalase

catalase isozyme 2

catalase isozyme 3

catalase isozyme 1-like

catalase isozyme 1

catalase isozyme A-like

catalase isozyme B-like

catalase isozyme C

catalase-3 (AA 1-495)

catalase 2

catalase 1

catalase-1-like

catalase isozyme 2

catalase isozyme 1

catalase-1

catalase isozyme 1

catalase isozyme 3

catalase isozyme 1

catalase isozyme 2

catalase isozyme 1

catalase isozyme 2

catalase-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00071	Fatty acid degradation	6
ath01212	Fatty acid metabolism	6
ath01200	Carbon metabolism	5
ath00592	alpha-Linolenic acid metabolism	4
ath04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	4
ath00860	Porphyrin metabolism	4
ath00460	Cyanoamino acid metabolism	2
ath00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00630	Glyoxylate and dicarboxylate metabolism	3
ath01200	Carbon metabolism	3
ath00900	Terpenoid backbone biosynthesis	2
ath04712	Circadian rhythm - plant	2
ath00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00630	Glyoxylate and dicarboxylate metabolism	5
bra01200	Carbon metabolism	5
bra00380	Tryptophan metabolism	3
bra04016	MAPK signaling pathway - plant	3
bra04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00630	Glyoxylate and dicarboxylate metabolism	5
bra01200	Carbon metabolism	5
bra00380	Tryptophan metabolism	3
bra04016	MAPK signaling pathway - plant	3
bra04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00380	Tryptophan metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra01200	Carbon metabolism	3
bra04016	MAPK signaling pathway - plant	3
bra04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna01200	Carbon metabolism	4
bna04016	MAPK signaling pathway - plant	4
bna04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	6
bna00630	Glyoxylate and dicarboxylate metabolism	6
bna01200	Carbon metabolism	6
bna04016	MAPK signaling pathway - plant	6
bna04146	Peroxisome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	5
bna00630	Glyoxylate and dicarboxylate metabolism	5
bna01200	Carbon metabolism	5
bna04016	MAPK signaling pathway - plant	5
bna04146	Peroxisome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	9
ghi01200	Carbon metabolism	7
ghi00380	Tryptophan metabolism	6
ghi00630	Glyoxylate and dicarboxylate metabolism	5
ghi04146	Peroxisome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00630	Glyoxylate and dicarboxylate metabolism	6
ghi00380	Tryptophan metabolism	4
ghi01200	Carbon metabolism	4
ghi04016	MAPK signaling pathway - plant	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00630	Glyoxylate and dicarboxylate metabolism	6
ghi00380	Tryptophan metabolism	4
ghi01200	Carbon metabolism	4
ghi04016	MAPK signaling pathway - plant	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	4
cit00630	Glyoxylate and dicarboxylate metabolism	3
cit04016	MAPK signaling pathway - plant	2
cit00260	Glycine, serine and threonine metabolism	2
cit00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	3
gma00380	Tryptophan metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma01200	Carbon metabolism	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	6
gma04075	Plant hormone signal transduction	4
gma00380	Tryptophan metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	3
gma00380	Tryptophan metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma01200	Carbon metabolism	2
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00630	Glyoxylate and dicarboxylate metabolism	4
vvi01200	Carbon metabolism	4
vvi04016	MAPK signaling pathway - plant	3
vvi04146	Peroxisome	3
vvi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04146	Peroxisome	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00561	Glycerolipid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04146	Peroxisome	3
ppo00380	Tryptophan metabolism	2
ppo00630	Glyoxylate and dicarboxylate metabolism	2
ppo01200	Carbon metabolism	2
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	3
ppo00280	Valine, leucine and isoleucine degradation	2
ppo00380	Tryptophan metabolism	2
ppo00630	Glyoxylate and dicarboxylate metabolism	2
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	7
sly00280	Valine, leucine and isoleucine degradation	6
sly04146	Peroxisome	4
sly00630	Glyoxylate and dicarboxylate metabolism	3
sly00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04146	Peroxisome	3
sly00630	Glyoxylate and dicarboxylate metabolism	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	5
sot04146	Peroxisome	5
sot00630	Glyoxylate and dicarboxylate metabolism	4
sot00380	Tryptophan metabolism	3
sot00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	3
sot00380	Tryptophan metabolism	2
sot00630	Glyoxylate and dicarboxylate metabolism	2
sot04016	MAPK signaling pathway - plant	2
sot04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00630	Glyoxylate and dicarboxylate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	7
nta04146	Peroxisome	7
nta00380	Tryptophan metabolism	5
nta00630	Glyoxylate and dicarboxylate metabolism	5
nta04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00630	Glyoxylate and dicarboxylate metabolism	6
nta01200	Carbon metabolism	6
nta04146	Peroxisome	6
nta00380	Tryptophan metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00630	Glyoxylate and dicarboxylate metabolism	3
nta01200	Carbon metabolism	3
nta04146	Peroxisome	3
nta00380	Tryptophan metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3
osa00380	Tryptophan metabolism	2
osa01200	Carbon metabolism	2
osa04142	Lysosome	2
osa00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	9
osa00630	Glyoxylate and dicarboxylate metabolism	6
osa04146	Peroxisome	5
osa00620	Pyruvate metabolism	4
osa01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	4
zma00620	Pyruvate metabolism	3
zma00710	Carbon fixation by Calvin cycle	3
zma00010	Glycolysis / Gluconeogenesis	2
zma00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	6
zma00071	Fatty acid degradation	5
zma01212	Fatty acid metabolism	5
zma00630	Glyoxylate and dicarboxylate metabolism	4
zma00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00380	Tryptophan metabolism	2
tae00630	Glyoxylate and dicarboxylate metabolism	2
tae01200	Carbon metabolism	2
tae04016	MAPK signaling pathway - plant	2
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00591	Linoleic acid metabolism	4
tae00940	Phenylpropanoid biosynthesis	3
tae00941	Flavonoid biosynthesis	3
tae00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
tae00380	Tryptophan metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00380	Tryptophan metabolism	3
tae00630	Glyoxylate and dicarboxylate metabolism	3
tae01200	Carbon metabolism	3
tae04016	MAPK signaling pathway - plant	3
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	5
hvu00630	Glyoxylate and dicarboxylate metabolism	4
hvu04146	Peroxisome	3
hvu00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2
hvu00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00460	Cyanoamino acid metabolism	4
sbi00500	Starch and sucrose metabolism	4
sbi00999	Biosynthesis of various plant secondary metabolites	4
sbi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	5
sbi00710	Carbon fixation by Calvin cycle	4
sbi00460	Cyanoamino acid metabolism	4
sbi00500	Starch and sucrose metabolism	4
sbi00999	Biosynthesis of various plant secondary metabolites	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04146	Peroxisome	5
bdi01200	Carbon metabolism	4
bdi00280	Valine, leucine and isoleucine degradation	4
bdi00330	Arginine and proline metabolism	3
bdi00071	Fatty acid degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	2
bdi00380	Tryptophan metabolism	2
bdi00630	Glyoxylate and dicarboxylate metabolism	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00630	Glyoxylate and dicarboxylate metabolism	4
bdi01200	Carbon metabolism	3
bdi00910	Nitrogen metabolism	2
bdi00460	Cyanoamino acid metabolism	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	8
cre00071	Fatty acid degradation	7
cre01212	Fatty acid metabolism	7
cre04146	Peroxisome	7
cre00592	alpha-Linolenic acid metabolism	6

Expression

Expression pattern

Entrez Gene ID^*

838652

838651

829661

103831878

103834369

103872849

111210255

106440733

106421785

107917962

107937827

107943729

102616866

102615999

547510

100037447

100037448

100232861

100244516

7496858

7494699

7492123

25490307

101259333

543585

543990

102598238

102577441

102577720

107771182

107828252

107799583

4328073

4342124

4331509

542370

542230

542369

123105808

123131745

123168517

123449777

123407150

8068221

8069231

110430724

100839582

100846426

100826491

5722404

The preparation time of this page was 0.4 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	2	3	2	3	1	3	3	3	3	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CAT1 (ath-m.4.bio coexpression data)

Top 50 enrichment test to CAT1 (ath-m.4.bio coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**