ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	AT1G01225	NC domain-containing protein-like protein
ath-u.5	AT1G01225	NC domain-containing protein-like protein
ath-r.7	AT1G01225	NC domain-containing protein-like protein
ath-m.9	AT1G01225	NC domain-containing protein-like protein
ath-e.2	AT1G01225	NC domain-containing protein-like protein
ath-m.4.hor	AT1G01225	NC domain-containing protein-like protein
ath-m.4.lig	AT1G01225	NC domain-containing protein-like protein
ath-m.4.str	AT1G01225	NC domain-containing protein-like protein
ath-m.4.tis	AT1G01225	NC domain-containing protein-like protein
bra-r.6	103843780	uncharacterized LOC103843780
bra-r.6	103836853	uncharacterized LOC103836853
bna-r.1	125593235	protein LEAD-SENSITIVE 1-like
bna-r.1	106436312	protein LEAD-SENSITIVE 1
bna-r.1	106377362	protein LEAD-SENSITIVE 1-like
ghi-r.1	107936674	protein LEAD-SENSITIVE 1
ghi-r.1	107900955	protein LEAD-SENSITIVE 1
ghi-r.1	107954444	protein LEAD-SENSITIVE 1
cit-r.1	102607118	hypothetical protein
cit-r.1	127901097	protein LEAD-SENSITIVE 1-like
gma-u.5	100797242	uncharacterized LOC100797242
gma-u.5	100527481	uncharacterized LOC100527481
vvi-u.5	100253490	uncharacterized LOC100253490
ppo-u.5	7492791	protein LEAD-SENSITIVE 1
ppo-u.5	7457412	protein LEAD-SENSITIVE 1
mtr-u.5	25499780	protein LEAD-SENSITIVE 1
sly-u.5	101257602	protein LEAD-SENSITIVE 1
sly-u.5	101248486	protein LEAD-SENSITIVE 1-like
sot-r.1	102599252	uncharacterized LOC102599252
sot-r.1	102589709	uncharacterized LOC102589709
nta-r.1	107817246	protein LEAD-SENSITIVE 1
nta-r.1	107812170	protein LEAD-SENSITIVE 1-like
osa-u.5	4346230	protein LEAD-SENSITIVE 1
osa-u.5	4347639	uncharacterized LOC4347639
zma-u.5	103647997	NC domain-containing protein-related
zma-u.5	103654437	NC domain-containing protein-related
zma-u.5	100279623	NC domain-containing protein-related
tae-r.2	123104491	protein LEAD-SENSITIVE 1
tae-r.2	123161817	protein LEAD-SENSITIVE 1
tae-r.2	123112776	protein LEAD-SENSITIVE 1
hvu-r.1	123400023	protein LEAD-SENSITIVE 1-like
hvu-r.1	123408819	protein LEAD-SENSITIVE 1-like
sbi-r.1	8060551	uncharacterized LOC8060551
sbi-r.1	8054882	uncharacterized LOC8054882
bdi-r.1	104583749	uncharacterized LOC104583749
bdi-r.1	100844419	uncharacterized LOC100844419

Top 50 coexpressed genes to AT1G01225 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G01225 (ath-m.4.bio coexpression data)

CoexMap"839358"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_563621.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 2, extr 1, nucl 1, cysk 1, cysk_nucl 1

(predict for NP_563621.1)

Subcellular
localization
TargetP

other 8

(predict for NP_563621.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for AT1G01225	ath-u.5 for AT1G01225	ath-r.7 for AT1G01225	ath-m.9 for AT1G01225	ath-e.2 for AT1G01225	ath-m.4.hor for AT1G01225	ath-m.4.lig for AT1G01225	ath-m.4.str for AT1G01225	ath-m.4.tis for AT1G01225	bra-r.6 for 103843780	bra-r.6 for 103836853	bna-r.1 for 125593235	bna-r.1 for 106436312	bna-r.1 for 106377362	ghi-r.1 for 107936674	ghi-r.1 for 107900955	ghi-r.1 for 107954444	cit-r.1 for 102607118	cit-r.1 for 127901097	gma-u.5 for 100797242	gma-u.5 for 100527481	vvi-u.5 for 100253490	ppo-u.5 for 7492791	ppo-u.5 for 7457412	mtr-u.5 for 25499780	sly-u.5 for 101257602	sly-u.5 for 101248486	sot-r.1 for 102599252	sot-r.1 for 102589709	nta-r.1 for 107817246	nta-r.1 for 107812170	osa-u.5 for 4346230	osa-u.5 for 4347639	zma-u.5 for 103647997	zma-u.5 for 103654437	zma-u.5 for 100279623	tae-r.2 for 123104491	tae-r.2 for 123161817	tae-r.2 for 123112776	hvu-r.1 for 123400023	hvu-r.1 for 123408819	sbi-r.1 for 8060551	sbi-r.1 for 8054882	bdi-r.1 for 104583749	bdi-r.1 for 100844419

Ortholog

Ortholog ID: 4268

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

NC domain-containing protein-like protein

uncharacterized LOC103843780

uncharacterized LOC103836853

protein LEAD-SENSITIVE 1-like

protein LEAD-SENSITIVE 1

hypothetical protein

protein LEAD-SENSITIVE 1-like

uncharacterized LOC100797242

uncharacterized LOC100527481

uncharacterized LOC100253490

protein LEAD-SENSITIVE 1

protein LEAD-SENSITIVE 1-like

uncharacterized LOC102599252

uncharacterized LOC102589709

protein LEAD-SENSITIVE 1

protein LEAD-SENSITIVE 1-like

protein LEAD-SENSITIVE 1

uncharacterized LOC4347639

NC domain-containing protein-related

protein LEAD-SENSITIVE 1

protein LEAD-SENSITIVE 1-like

uncharacterized LOC8060551

uncharacterized LOC8054882

uncharacterized LOC104583749

uncharacterized LOC100844419

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00061	Fatty acid biosynthesis	6
ath01212	Fatty acid metabolism	5
ath01200	Carbon metabolism	4
ath01240	Biosynthesis of cofactors	4
ath00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	4
bna04130	SNARE interactions in vesicular transport	3
bna03082	ATP-dependent chromatin remodeling	2
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	3
bna03040	Spliceosome	3
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2
bna04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00052	Galactose metabolism	2
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2
vvi00100	Steroid biosynthesis	2
vvi00051	Fructose and mannose metabolism	2
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00480	Glutathione metabolism	2
sly00230	Purine metabolism	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00062	Fatty acid elongation	2
sot04626	Plant-pathogen interaction	2
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	5
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	4
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00040	Pentose and glucuronate interconversions	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04145	Phagosome	3
sbi04517	IgSF CAM signaling	3
sbi04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00480	Glutathione metabolism	3
bdi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	3
bdi01250	Biosynthesis of nucleotide sugars	2
bdi04145	Phagosome	2
bdi04517	IgSF CAM signaling	2
bdi04814	Motor proteins	2

Expression

Expression pattern

Entrez Gene ID^*

839358

103843780

103836853

125593235

106377362

106352536

107936674

107900955

107954444

102607118

127901097

100797242

100527481

100253490

7492791

7457412

25499780

101257602

101248486

102599252

102589709

107817246

107812170

4346230

4347639

103647997

103654437

100279623

123112776

123122255

123152394

123400023

123408819

8060551

8054882

104583749

100844419

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	3	2	2	1	2	1	2	2	2	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G01225 (ath-m.4.bio coexpression data)

Top 50 enrichment test to AT1G01225 (ath-m.4.bio coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**