ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-u.5	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-r.7	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-m.9	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-e.2	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-m.4.hor	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-m.4.lig	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-m.4.str	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-m.4.tis	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-u.5	AT1G45231	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-u.5	AT1G30545	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
bra-r.6	103828904	trimethylguanosine synthase
bra-r.6	103833434	trimethylguanosine synthase
bra-r.6	103848369	trimethylguanosine synthase
bna-r.1	125575297	trimethylguanosine synthase-like
bna-r.1	106392237	trimethylguanosine synthase
ghi-r.1	107910222	trimethylguanosine synthase
cit-r.1	102608303	uncharacterized LOC102608303
gma-u.5	100782129	trimethylguanosine synthase
vvi-u.5	100262697	uncharacterized LOC100262697
vvi-u.5	100262065	uncharacterized LOC100262065
ppo-u.5	18104882	uncharacterized LOC18104882
mtr-u.5	11428036	trimethylguanosine synthase
sly-u.5	101266167	uncharacterized LOC101266167
sly-u.5	101263590	uncharacterized LOC101263590
sot-r.1	102606264	uncharacterized LOC102606264
sot-r.1	102588042	trimethylguanosine synthase
nta-r.1	107819562	uncharacterized LOC107819562
nta-r.1	107825078	uncharacterized LOC107825078
nta-r.1	107830514	uncharacterized LOC107830514
osa-u.5	4333042	uncharacterized LOC4333042
zma-u.5	100277845	uncharacterized LOC100277845
tae-r.2	123149185	trimethylguanosine synthase
tae-r.2	123183334	trimethylguanosine synthase
hvu-r.1	123408988	trimethylguanosine synthase-like
hvu-r.1	123452415	uncharacterized LOC123452415
sbi-r.1	8080440	uncharacterized LOC8080440
bdi-r.1	100828859	trimethylguanosine synthase
bdi-r.1	100844736	trimethylguanosine synthase
bdi-r.1	104581625	uncharacterized LOC104581625
cre-r.1	CHLRE_06g290800v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_001154386.2 [sequence] [blastp]
NP_001319114.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 2, nucl 2	(predict for NP_001154386.2)
extr 4, chlo 3, nucl 1, cyto 1, mito 1, vacu 1, cyto_nucl 1	(predict for NP_001319114.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001154386.2)
scret 9	(predict for NP_001319114.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for AT1G30550	ath-u.5 for AT1G30550	ath-r.7 for AT1G30550	ath-m.9 for AT1G30550	ath-e.2 for AT1G30550	ath-m.4.hor for AT1G30550	ath-m.4.lig for AT1G30550	ath-m.4.str for AT1G30550	ath-m.4.tis for AT1G30550	ath-u.5 for AT1G45231	ath-u.5 for AT1G30545	bra-r.6 for 103828904	bra-r.6 for 103833434	bra-r.6 for 103848369	bna-r.1 for 125575297	bna-r.1 for 106392237	ghi-r.1 for 107910222	cit-r.1 for 102608303	gma-u.5 for 100782129	vvi-u.5 for 100262697	vvi-u.5 for 100262065	ppo-u.5 for 18104882	mtr-u.5 for 11428036	sly-u.5 for 101266167	sly-u.5 for 101263590	sot-r.1 for 102606264	sot-r.1 for 102588042	nta-r.1 for 107819562	nta-r.1 for 107825078	nta-r.1 for 107830514	osa-u.5 for 4333042	zma-u.5 for 100277845	tae-r.2 for 123149185	tae-r.2 for 123183334	hvu-r.1 for 123408988	hvu-r.1 for 123452415	sbi-r.1 for 8080440	bdi-r.1 for 100828859	bdi-r.1 for 100844736	bdi-r.1 for 104581625	cre-r.1 for CHLRE_06g290800v5

Ortholog

Ortholog ID: 2859

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

S-adenosyl-L-methionine-dependent methyltransferase superfamily protein

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

S-adenosyl-L-methionine-dependent methyltransferase superfamily protein

trimethylguanosine synthase

trimethylguanosine synthase-like

trimethylguanosine synthase

uncharacterized LOC102608303

trimethylguanosine synthase

uncharacterized LOC100262697

uncharacterized LOC100262065

uncharacterized LOC18104882

trimethylguanosine synthase

uncharacterized LOC101266167

uncharacterized LOC101263590

uncharacterized LOC102606264

trimethylguanosine synthase

uncharacterized LOC107819562

uncharacterized LOC107825078

uncharacterized LOC107832327

uncharacterized LOC4333042

uncharacterized LOC100277845

trimethylguanosine synthase

trimethylguanosine synthase-like

uncharacterized LOC123452415

uncharacterized LOC8080440

trimethylguanosine synthase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03020	RNA polymerase	2
vvi03420	Nucleotide excision repair	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03008	Ribosome biogenesis in eukaryotes	2
tae03010	Ribosome	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	3
sbi03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

839935

841092

28717281

103828904

103833434

103868442

111210505

106392098

107910222

102608303

100782129

100262697

100262065

18104882

11428036

101266167

101263590

102606264

102588042

107819562

107825078

107832327

4333042

100277845

123149185

123408988

123452415

8080440

100828859

100844736

5721086

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G30550 (ath-m.4.bio coexpression data)

Top 50 enrichment test to AT1G30550 (ath-m.4.bio coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	2	1	1	1	2	1	1	2	2	3	1	1	2	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G30550 (ath-m.4.bio coexpression data)

Top 50 enrichment test to AT1G30550 (ath-m.4.bio coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**