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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AT1G54680   translation initiation factor 3 subunit I 
 ath-m.9   AT1G54680   translation initiation factor 3 subunit I 
 ath-m.4.hor   AT1G54680   translation initiation factor 3 subunit I 
 ath-m.4.lig   AT1G54680   translation initiation factor 3 subunit I 
 ath-m.4.str   AT1G54680   translation initiation factor 3 subunit I 
 ath-m.4.tis   AT1G54680   translation initiation factor 3 subunit I 
 bra-r.6   103844420   uncharacterized LOC103844420 
 bna-r.1   106397188   uncharacterized LOC106397188 
 bna-r.1   106376609   uncharacterized LOC106376609 
 bna-r.1   106347092   uncharacterized LOC106347092 
 cit-r.1   102619675   uncharacterized LOC102619675 
 vvi-u.5   100257204   uncharacterized LOC100257204 
 sly-u.5   101265151   uncharacterized LOC101265151 
 sot-r.1   102583329   uncharacterized LOC102583329 
 nta-r.1   107783941   uncharacterized LOC107783941 
 nta-r.1   107819399   uncharacterized LOC107819399 

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Top 50 coexpressed genes to AT1G54680 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G54680 (ath-m.4.bio coexpression data)

CoexMap"841909"


athAT1G54680 | Entrez gene ID : 841909      
Species ath bra bna cit vvi sly sot nta cre ppo hvu mtr tae bdi osa gma zma ghi sbi
Paralog 6 1 3 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006508 [list] [network] proteolysis  (361 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (19 genes)  IEA  
GO:0004222 [list] [network] metalloendopeptidase activity  (35 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
Protein NP_001185227.1 [sequence] [blastp]
NP_001319230.1 [sequence] [blastp]
NP_001319231.1 [sequence] [blastp]
NP_001320305.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001185227.1)
chlo 4,  chlo_mito 3,  nucl 2,  cyto_nucl 1,  mito 1,  plas 1,  extr 1,  cysk 1,  cysk_plas 1  (predict for NP_001319230.1)
nucl 4,  cyto_nucl 4,  cyto 2,  chlo 1,  mito 1,  plas 1,  pero 1,  chlo_mito 1,  mito_plas 1  (predict for NP_001319231.1)
chlo 4,  nucl 4,  chlo_mito 2,  plas 1,  extr 1,  cysk 1,  cysk_plas 1  (predict for NP_001320305.1)
Subcellular
localization
TargetP
scret 7  (predict for NP_001185227.1)
chlo 3  (predict for NP_001319230.1)
other 6  (predict for NP_001319231.1)
chlo 3  (predict for NP_001320305.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
AT1G54680
ath-m.9
for
AT1G54680
ath-m.4.hor
for
AT1G54680
ath-m.4.lig
for
AT1G54680
ath-m.4.str
for
AT1G54680
ath-m.4.tis
for
AT1G54680
bra-r.6
for
103844420
bna-r.1
for
106397188
bna-r.1
for
106376609
bna-r.1
for
106347092
cit-r.1
for
102619675
vvi-u.5
for
100257204
sly-u.5
for
101265151
sot-r.1
for
102583329
nta-r.1
for
107783941
nta-r.1
for
107819399


Ortholog ID: 14777
Species bra bna bna bna cit vvi sly sot nta nta
Symbol LOC103844420 LOC106397188 LOC106376609 LOC106347092 LOC102619675 LOC100257204 LOC101265151 LOC102583329 LOC107783941 LOC107819399
Function* uncharacterized LOC103844420 uncharacterized LOC106397188 uncharacterized LOC106376609 uncharacterized LOC106347092 uncharacterized LOC102619675 uncharacterized LOC100257204 uncharacterized LOC101265151 uncharacterized LOC102583329 uncharacterized LOC107783941 uncharacterized LOC107819399
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 3
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 3
bna00410 beta-Alanine metabolism 3
bna00640 Propanoate metabolism 3
bna01200 Carbon metabolism 3
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00410 beta-Alanine metabolism 2
vvi00640 Propanoate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 4
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103844420 106397188 106376609 106347092 102619675 100257204 101265151 102583329 107783941 107819399
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