ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	LGT8	glucosyl transferase family 8
ath-u.5	LGT8	glucosyl transferase family 8
ath-r.7	LGT8	glucosyl transferase family 8
ath-m.9	LGT8	glucosyl transferase family 8
ath-e.2	LGT8	glucosyl transferase family 8
ath-m.4.hor	LGT8	glucosyl transferase family 8
ath-m.4.lig	LGT8	glucosyl transferase family 8
ath-m.4.str	LGT8	glucosyl transferase family 8
ath-m.4.tis	LGT8	glucosyl transferase family 8
ath-u.5	GATL10	galacturonosyltransferase-like 10
ath-u.5	GATL7	galacturonosyltransferase-like 7
ath-u.5	GATL6	galacturonosyltransferase 6
bra-r.6	103828935	probable galacturonosyltransferase-like 6
bra-r.6	103841111	probable galacturonosyltransferase-like 7
bra-r.6	103840702	probable galacturonosyltransferase-like 8
bna-r.1	125586377	probable galacturonosyltransferase-like 6
bna-r.1	111212730	probable galacturonosyltransferase-like 6
ghi-r.1	107909609	probable galacturonosyltransferase-like 9
ghi-r.1	107912349	probable galacturonosyltransferase-like 7
ghi-r.1	107924405	probable galacturonosyltransferase-like 7
cit-r.1	102612425	probable galacturonosyltransferase-like 10
cit-r.1	102613476	probable galacturonosyltransferase-like 9
cit-r.1	102622159	probable galacturonosyltransferase-like 7
gma-u.5	100813364	probable galacturonosyltransferase-like 9
gma-u.5	100778263	probable galacturonosyltransferase-like 9
gma-u.5	100809111	probable galacturonosyltransferase-like 7
vvi-u.5	100241606	probable galacturonosyltransferase-like 9
vvi-u.5	100265777	probable galacturonosyltransferase-like 7
vvi-u.5	100243965	probable galacturonosyltransferase-like 10
ppo-u.5	18102386	probable galacturonosyltransferase-like 9
ppo-u.5	7473239	probable galacturonosyltransferase-like 9
ppo-u.5	7478857	probable galacturonosyltransferase-like 7
mtr-u.5	11444359	probable galacturonosyltransferase-like 10
mtr-u.5	11430017	probable galacturonosyltransferase-like 7
mtr-u.5	11414397	probable galacturonosyltransferase-like 9
sly-u.5	101246345	probable galacturonosyltransferase-like 9
sly-u.5	101262558	probable galacturonosyltransferase-like 7
sly-u.5	101265190	probable galacturonosyltransferase-like 10
sot-r.1	102603101	probable galacturonosyltransferase-like 10
sot-r.1	102583441	probable galacturonosyltransferase-like 9
sot-r.1	102583903	probable galacturonosyltransferase-like 7
nta-r.1	107814676	putative galacturonosyltransferase-like 9
nta-r.1	107803382	putative galacturonosyltransferase-like 9
nta-r.1	107794658	putative galacturonosyltransferase-like 9
osa-u.5	4340642	probable galacturonosyltransferase-like 9
osa-u.5	4332572	probable galacturonosyltransferase-like 7
osa-u.5	4330672	probable galacturonosyltransferase-like 9
zma-u.5	100382462	uncharacterized LOC100382462
zma-u.5	100191570	putative galacturonosyltransferase-like 9
zma-u.5	100217291	putative galacturonosyltransferase-like 9
tae-r.2	123092394	probable galacturonosyltransferase-like 7
tae-r.2	123085634	probable galacturonosyltransferase-like 7
tae-r.2	123097714	probable galacturonosyltransferase-like 7
hvu-r.1	123448857	probable galacturonosyltransferase-like 7
hvu-r.1	123412159	probable galacturonosyltransferase-like 9
sbi-r.1	8081103	probable galacturonosyltransferase-like 7
sbi-r.1	8061497	probable galacturonosyltransferase-like 9
sbi-r.1	8075735	probable galacturonosyltransferase-like 9
bdi-r.1	100842863	probable galacturonosyltransferase-like 2
bdi-r.1	100841465	probable galacturonosyltransferase-like 7

Top 50 coexpressed genes to LGT8 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to LGT8 (ath-m.4.bio coexpression data)

CoexMap"843345"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	IDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM

GO MF

GO:0047262 [list] [network] polygalacturonate 4-alpha-galacturonosyltransferase activity	(25 genes)	ISS
GO:0016757 [list] [network] glycosyltransferase activity	(554 genes)	ISS

Protein

NP_001117576.1 [sequence] [blastp]
NP_564983.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 4, chlo 3, mito 1, extr 1	(predict for NP_001117576.1)
vacu 4, chlo 3, mito 1, extr 1	(predict for NP_564983.1)

Subcellular
localization
TargetP

scret 9, mito 3	(predict for NP_001117576.1)
scret 9, mito 3	(predict for NP_564983.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for LGT8	ath-u.5 for LGT8	ath-r.7 for LGT8	ath-m.9 for LGT8	ath-e.2 for LGT8	ath-m.4.hor for LGT8	ath-m.4.lig for LGT8	ath-m.4.str for LGT8	ath-m.4.tis for LGT8	ath-u.5 for GATL10	ath-u.5 for GATL7	ath-u.5 for GATL6	bra-r.6 for 103828935	bra-r.6 for 103841111	bra-r.6 for 103840702	bna-r.1 for 125586377	bna-r.1 for 111212730	ghi-r.1 for 107909609	ghi-r.1 for 107912349	ghi-r.1 for 107924405	cit-r.1 for 102612425	cit-r.1 for 102613476	cit-r.1 for 102622159	gma-u.5 for 100813364	gma-u.5 for 100778263	gma-u.5 for 100809111	vvi-u.5 for 100241606	vvi-u.5 for 100265777	vvi-u.5 for 100243965	ppo-u.5 for 18102386	ppo-u.5 for 7473239	ppo-u.5 for 7478857	mtr-u.5 for 11444359	mtr-u.5 for 11430017	mtr-u.5 for 11414397	sly-u.5 for 101246345	sly-u.5 for 101262558	sly-u.5 for 101265190	sot-r.1 for 102603101	sot-r.1 for 102583441	sot-r.1 for 102583903	nta-r.1 for 107814676	nta-r.1 for 107803382	nta-r.1 for 107794658	osa-u.5 for 4340642	osa-u.5 for 4332572	osa-u.5 for 4330672	zma-u.5 for 100382462	zma-u.5 for 100191570	zma-u.5 for 100217291	tae-r.2 for 123092394	tae-r.2 for 123085634	tae-r.2 for 123097714	hvu-r.1 for 123448857	hvu-r.1 for 123412159	sbi-r.1 for 8081103	sbi-r.1 for 8061497	sbi-r.1 for 8075735	bdi-r.1 for 100842863	bdi-r.1 for 100841465

Ortholog

Ortholog ID: 765

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LGT8

GATL6

GATL5

Function^*

glucosyl transferase family 8

galacturonosyltransferase 6

galacturonosyltransferase 5

probable galacturonosyltransferase-like 10

probable galacturonosyltransferase-like 6

probable galacturonosyltransferase-like 9