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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   PDE338   Nucleic acid-binding proteins superfamily 
 ath-u.5   PDE338   Nucleic acid-binding proteins superfamily 
 ath-r.7   PDE338   Nucleic acid-binding proteins superfamily 
 ath-m.9   PDE338   Nucleic acid-binding proteins superfamily 
 ath-e.2   PDE338   Nucleic acid-binding proteins superfamily 
 ath-m.4.hor   PDE338   Nucleic acid-binding proteins superfamily 
 ath-m.4.lig   PDE338   Nucleic acid-binding proteins superfamily 
 ath-m.4.str   PDE338   Nucleic acid-binding proteins superfamily 
 ath-m.4.tis   PDE338   Nucleic acid-binding proteins superfamily 
 bra-r.6   103831680   protein PIGMENT DEFECTIVE 338, chloroplastic 
 bna-r.1   106381078   protein PIGMENT DEFECTIVE 338, chloroplastic 
 bna-r.1   BNAA07G29500D   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ghi-r.1   107910474   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ghi-r.1   121214605   protein PIGMENT DEFECTIVE 338, chloroplastic 
 cit-r.1   102610673   protein PIGMENT DEFECTIVE 338, chloroplastic 
 gma-u.5   100811564   protein PIGMENT DEFECTIVE 338, chloroplastic 
 gma-u.5   100820145   protein PIGMENT DEFECTIVE 338, chloroplastic 
 gma-u.5   100780996   protein PIGMENT DEFECTIVE 338, chloroplastic 
 vvi-u.5   100240915   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ppo-u.5   7467795   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ppo-u.5   7492491   protein PIGMENT DEFECTIVE 338, chloroplastic 
 mtr-u.5   25485041   protein PIGMENT DEFECTIVE 338, chloroplastic 
 sly-u.5   101263198   protein PIGMENT DEFECTIVE 338, chloroplastic 
 sot-r.1   102580008   30S ribosomal protein S1 homolog A 
 nta-r.1   107768976   protein PIGMENT DEFECTIVE 338, chloroplastic 
 nta-r.1   107763574   protein PIGMENT DEFECTIVE 338, chloroplastic-like 
 osa-u.5   4324446   protein PIGMENT DEFECTIVE 338, chloroplastic 
 osa-u.5   4339443   protein PIGMENT DEFECTIVE 338, chloroplastic 
 zma-u.5   103630659   uncharacterized LOC103630659 
 zma-u.5   100193118   uncharacterized LOC100193118 
 tae-r.2   123064803   protein PIGMENT DEFECTIVE 338, chloroplastic 
 tae-r.2   123182797   protein PIGMENT DEFECTIVE 338, chloroplastic 
 tae-r.2   123070022   protein PIGMENT DEFECTIVE 338, chloroplastic 
 hvu-r.1   123443792   protein PIGMENT DEFECTIVE 338, chloroplastic-like 
 hvu-r.1   123448389   protein PIGMENT DEFECTIVE 338, chloroplastic-like 
 sbi-r.1   8082461   30S ribosomal protein S1 
 sbi-r.1   8068985   30S ribosomal protein S1 homolog A 
 bdi-r.1   100833069   uncharacterized LOC100833069 
 bdi-r.1   100830014   30S ribosomal protein S1 homolog A 

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Top 50 coexpressed genes to PDE338 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDE338 (ath-m.4.bio coexpression data)

CoexMap"843502"


athPDE338 | Entrez gene ID : 843502      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 3 1 2 1 1 1 2 2 2 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0045727 [list] [network] positive regulation of translation  (8 genes)  IDA  
GO:0043489 [list] [network] RNA stabilization  (13 genes)  IMP  
GO:0010196 [list] [network] nonphotochemical quenching  (17 genes)  IMP  
GO:0032544 [list] [network] plastid translation  (20 genes)  IMP  
GO:0009657 [list] [network] plastid organization  (265 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO MF
GO:0034336 [list] [network] misfolded RNA binding  (2 genes)  IDA  
GO:0140691 [list] [network] RNA folding chaperone  (8 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001321757.1 [sequence] [blastp]
NP_177317.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for NP_001321757.1)
chlo 9,  chlo_mito 5  (predict for NP_177317.2)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001321757.1)
chlo 8  (predict for NP_177317.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
PDE338
ath-u.5
for
PDE338
ath-r.7
for
PDE338
ath-m.9
for
PDE338
ath-e.2
for
PDE338
ath-m.4.hor
for
PDE338
ath-m.4.lig
for
PDE338
ath-m.4.str
for
PDE338
ath-m.4.tis
for
PDE338
bra-r.6
for
103831680
bna-r.1
for
106381078
bna-r.1
for
BNAA07G29500D
ghi-r.1
for
107910474
ghi-r.1
for
121214605
cit-r.1
for
102610673
gma-u.5
for
100811564
gma-u.5
for
100820145
gma-u.5
for
100780996
vvi-u.5
for
100240915
ppo-u.5
for
7467795
ppo-u.5
for
7492491
mtr-u.5
for
25485041
sly-u.5
for
101263198
sot-r.1
for
102580008
nta-r.1
for
107768976
nta-r.1
for
107763574
osa-u.5
for
4324446
osa-u.5
for
4339443
zma-u.5
for
103630659
zma-u.5
for
100193118
tae-r.2
for
123064803
tae-r.2
for
123182797
tae-r.2
for
123070022
hvu-r.1
for
123443792
hvu-r.1
for
123448389
sbi-r.1
for
8082461
sbi-r.1
for
8068985
bdi-r.1
for
100833069
bdi-r.1
for
100830014


Ortholog ID: 6438
Species ath bra bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol PDE338 LOC103831680 LOC106381078 BNAA07G29500D LOC107910474 LOC121214605 LOC102610673 LOC100811564 LOC100820145 LOC100780996 LOC100240915 LOC7467795 LOC7492491 LOC25485041 LOC101263198 LOC102580008 LOC107768976 LOC107763574 LOC4324446 LOC4339443 LOC103630659 LOC100193118 LOC123070022 LOC123078481 LOC123142269 LOC123443792 LOC123448389 LOC8082461 LOC8068985 LOC100833069 LOC100830014
Function* Nucleic acid-binding proteins superfamily protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic 30S ribosomal protein S1 homolog A protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic-like protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic uncharacterized LOC103630659 uncharacterized LOC100193118 protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic-like protein PIGMENT DEFECTIVE 338, chloroplastic-like 30S ribosomal protein S1 30S ribosomal protein S1 homolog A uncharacterized LOC100833069 30S ribosomal protein S1 homolog A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843502 103831680 106381078 106354165 107910474 121214605 102610673 100811564 100820145 100780996 100240915 7467795 7492491 25485041 101263198 102580008 107768976 107763574 4324446 4339443 103630659 100193118 123070022 123078481 123142269 123443792 123448389 8082461 8068985 100833069 100830014
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