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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   LPA3   Low PSII Accumulation 3 
 ath-u.5   LPA3   Low PSII Accumulation 3 
 ath-r.7   LPA3   Low PSII Accumulation 3 
 ath-m.9   LPA3   Low PSII Accumulation 3 
 ath-e.2   LPA3   Low PSII Accumulation 3 
 ath-m.4.hor   LPA3   Low PSII Accumulation 3 
 ath-m.4.lig   LPA3   Low PSII Accumulation 3 
 ath-m.4.str   LPA3   Low PSII Accumulation 3 
 ath-m.4.tis   LPA3   Low PSII Accumulation 3 
 bra-r.6   103831796   protein LOW PSII ACCUMULATION 3, chloroplastic 
 bna-r.1   106354251   protein LPA3 
 bna-r.1   106406530   protein LPA3 
 ghi-r.1   107906416   protein LOW PSII ACCUMULATION 3, chloroplastic 
 ghi-r.1   107958464   protein LOW PSII ACCUMULATION 3, chloroplastic 
 cit-r.1   102619183   hypothetical protein 
 gma-u.5   100803725   uncharacterized LOC100803725 
 vvi-u.5   100263772   protein LPA3 
 ppo-u.5   18094255   protein LPA3 
 mtr-u.5   11423735   protein LOW PSII ACCUMULATION 3, chloroplastic 
 sly-u.5   101257480   protein LPA3 
 sot-r.1   102581561   protein LOW PSII ACCUMULATION 3, chloroplastic-like 
 nta-r.1   107824589   protein LPA3 
 nta-r.1   107798621   protein LPA3 
 osa-u.5   4328085   protein LPA3 
 zma-u.5   100217070   uncharacterized LOC100217070 
 tae-r.2   123135646   protein LPA3 
 tae-r.2   123131773   protein LPA3 
 tae-r.2   123143225   protein LPA3 
 hvu-r.1   123402823   protein LPA3 
 sbi-r.1   8085205   protein LOW PSII ACCUMULATION 3, chloroplastic 
 bdi-r.1   100838483   protein LOW PSII ACCUMULATION 3, chloroplastic 
 cre-r.1   CHLRE_03g184550v5   uncharacterized protein 

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Top 50 coexpressed genes to LPA3 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LPA3 (ath-m.4.bio coexpression data)

CoexMap"843637"


athLPA3 | Entrez gene ID : 843637      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_565054.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_565054.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_565054.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
LPA3
ath-u.5
for
LPA3
ath-r.7
for
LPA3
ath-m.9
for
LPA3
ath-e.2
for
LPA3
ath-m.4.hor
for
LPA3
ath-m.4.lig
for
LPA3
ath-m.4.str
for
LPA3
ath-m.4.tis
for
LPA3
bra-r.6
for
103831796
bna-r.1
for
106354251
bna-r.1
for
106406530
ghi-r.1
for
107906416
ghi-r.1
for
107958464
cit-r.1
for
102619183
gma-u.5
for
100803725
vvi-u.5
for
100263772
ppo-u.5
for
18094255
mtr-u.5
for
11423735
sly-u.5
for
101257480
sot-r.1
for
102581561
nta-r.1
for
107824589
nta-r.1
for
107798621
osa-u.5
for
4328085
zma-u.5
for
100217070
tae-r.2
for
123135646
tae-r.2
for
123131773
tae-r.2
for
123143225
hvu-r.1
for
123402823
sbi-r.1
for
8085205
bdi-r.1
for
100838483
cre-r.1
for
CHLRE_03g184550v5


Ortholog ID: 11125
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LPA3 LOC103831796 LOC106354251 LOC106406530 LOC107906416 LOC107958464 LOC102619183 LOC100803725 LOC100263772 LOC18094255 LOC11423735 LOC101257480 LOC102581561 LOC107824589 LOC107798621 LOC4328085 LOC100217070 LOC123135646 LOC123131773 LOC123143225 LOC123402823 LOC8085205 LOC100838483 CHLRE_03g184550v5
Function* Low PSII Accumulation 3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LOW PSII ACCUMULATION 3, chloroplastic hypothetical protein uncharacterized LOC100803725 protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic-like protein LPA3 protein LPA3 protein LPA3 uncharacterized LOC100217070 protein LPA3 protein LPA3 protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LOW PSII ACCUMULATION 3, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath01230 Biosynthesis of amino acids 4
ath00010 Glycolysis / Gluconeogenesis 3
ath00710 Carbon fixation by Calvin cycle 3
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 2
bra00040 Pentose and glucuronate interconversions 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
ghi00750 Vitamin B6 metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi00190 Oxidative phosphorylation 2
ghi00750 Vitamin B6 metabolism 2
ghi03010 Ribosome 2
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma01200 Carbon metabolism 3
gma00620 Pyruvate metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00190 Oxidative phosphorylation 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
sly00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot01230 Biosynthesis of amino acids 5
sot00010 Glycolysis / Gluconeogenesis 3
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre01230 Biosynthesis of amino acids 3
cre00970 Aminoacyl-tRNA biosynthesis 2
cre00906 Carotenoid biosynthesis 2
cre00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843637 103831796 106354251 106406530 107906416 107958464 102619183 100803725 100263772 18094255 11423735 101257480 102581561 107824589 107798621 4328085 100217070 123135646 123131773 123143225 123402823 8085205 100838483 5717421
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