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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   100253004   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 vvi-u.5   100253004   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 vvi-m.5   100253004   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 ath-u.5   AT3G19800   E3 ubiquitin-protein ligase, putative (DUF177) 
 gma-u.5   100788798   uncharacterized LOC100788798 
 bra-r.6   103836959   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 ppo-u.5   18099087   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 mtr-u.5   11439196   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 ghi-r.1   107909984   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 ghi-r.1   107887467   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 bna-r.1   106346409   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic-like 
 bna-r.1   BNAC01G33080D   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 cit-r.1   102620378   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 sly-u.5   101246579   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 sot-r.1   102605612   uncharacterized LOC102605612 
 nta-r.1   107832154   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 nta-r.1   107803123   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 osa-u.5   4336446   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 zma-u.5   100278189   uncharacterized LOC100278189 
 tae-r.2   123185736   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 tae-r.2   123049635   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 tae-r.2   123041671   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 hvu-r.1   123430552   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 sbi-r.1   8082853   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 
 bdi-r.1   100827028   large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 

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Top 50 coexpressed genes to 100253004 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100253004 (vvi-r.5 coexpression data)

CoexMap"100253004"


vviLOC100253004 | Entrez gene ID : 100253004      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_010654246.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for XP_010654246.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_010654246.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
100253004
vvi-u.5
for
100253004
vvi-m.5
for
100253004
ath-u.5
for
AT3G19800
gma-u.5
for
100788798
bra-r.6
for
103836959
ppo-u.5
for
18099087
mtr-u.5
for
11439196
ghi-r.1
for
107909984
ghi-r.1
for
107887467
bna-r.1
for
106346409
bna-r.1
for
BNAC01G33080D
cit-r.1
for
102620378
sly-u.5
for
101246579
sot-r.1
for
102605612
nta-r.1
for
107832154
nta-r.1
for
107803123
osa-u.5
for
4336446
zma-u.5
for
100278189
tae-r.2
for
123185736
tae-r.2
for
123049635
tae-r.2
for
123041671
hvu-r.1
for
123430552
sbi-r.1
for
8082853
bdi-r.1
for
100827028


Ortholog ID: 11317
Species vvi ath gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC100253004 AT3G19800 LOC100788798 LOC103836959 LOC18099087 LOC11439196 LOC107909984 LOC107887467 LOC106346409 BNAC01G33080D LOC102620378 LOC101246579 LOC102605612 LOC107832154 LOC107803123 LOC4336446 LOC100278189 LOC123185736 LOC123049635 LOC123041671 LOC123430552 LOC8082853 LOC100827028
Function* large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic E3 ubiquitin-protein ligase, putative (DUF177) uncharacterized LOC100788798 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic-like large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic uncharacterized LOC102605612 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic uncharacterized LOC100278189 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 3
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 9
bna01200 Carbon metabolism 9
bna00260 Glycine, serine and threonine metabolism 8
bna00670 One carbon pool by folate 8
bna00785 Lipoic acid metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 9
sly00710 Carbon fixation by Calvin cycle 6
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly00010 Glycolysis / Gluconeogenesis 3
sly00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 4
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00195 Photosynthesis 3
sot00260 Glycine, serine and threonine metabolism 2
sot00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 3
hvu01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100253004 821517 100788798 103836959 18099087 11439196 107909984 107887467 106346409 106352964 102620378 101246579 102605612 107832154 107803123 4336446 100278189 123185736 123049635 123041671 123430552 8082853 100827028
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