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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   100253544   protein RETICULATA-RELATED 5, chloroplastic 
 vvi-u.5   100253544   protein RETICULATA-RELATED 5, chloroplastic 
 ath-u.5   AT2G40400   DUF399 family protein, putative (DUF399 and DUF3411) 
 ath-u.5   AT3G56140   DUF399 family protein, putative (DUF399 and DUF3411) 
 gma-u.5   100790538   protein RETICULATA-RELATED 5, chloroplastic 
 gma-u.5   100810366   protein RETICULATA-RELATED 5, chloroplastic 
 bra-r.6   103865793   protein RETICULATA-RELATED 5, chloroplastic 
 bra-r.6   103830036   protein RETICULATA-RELATED 6, chloroplastic 
 ppo-u.5   7462105   protein RETICULATA-RELATED 6, chloroplastic 
 mtr-u.5   11418002   protein RETICULATA-RELATED 5, chloroplastic 
 ghi-r.1   107954278   protein RETICULATA-RELATED 5, chloroplastic 
 ghi-r.1   107953083   protein RETICULATA-RELATED 5, chloroplastic 
 bna-r.1   106391587   protein RETICULATA-RELATED 5, chloroplastic 
 bna-r.1   106382031   protein RETICULATA-RELATED 6, chloroplastic 
 bna-r.1   106447534   protein RETICULATA-RELATED 5, chloroplastic-like 
 cit-r.1   102607971   protein RETICULATA-RELATED 5, chloroplastic-like 
 sly-u.5   101264128   protein RETICULATA-RELATED 5, chloroplastic 
 sot-r.1   102605434   protein RETICULATA-RELATED 5, chloroplastic 
 nta-r.1   107764337   protein RETICULATA-RELATED 5, chloroplastic 
 nta-r.1   107779932   protein RETICULATA-RELATED 5, chloroplastic-like 
 osa-u.5   107278649   protein RETICULATA-RELATED 5, chloroplastic 
 osa-u.5   4327520   protein RETICULATA-RELATED 5, chloroplastic 
 zma-u.5   100191628   Protein RETICULATA-RELATED 6 chloroplastic 
 zma-u.5   100274936   uncharacterized LOC100274936 
 tae-r.2   123079613   protein RETICULATA-RELATED 6, chloroplastic 
 tae-r.2   123071256   protein RETICULATA-RELATED 6, chloroplastic 
 tae-r.2   123062468   protein RETICULATA-RELATED 6, chloroplastic 
 hvu-r.1   123444996   protein RETICULATA-RELATED 6, chloroplastic-like 
 hvu-r.1   123444827   protein RETICULATA-RELATED 5, chloroplastic-like 
 sbi-r.1   8076990   protein RETICULATA-RELATED 5, chloroplastic 
 sbi-r.1   8085412   protein RETICULATA-RELATED 5, chloroplastic 
 bdi-r.1   100846187   protein RETICULATA-RELATED 6, chloroplastic 
 bdi-r.1   100846697   protein RETICULATA-RELATED 5, chloroplastic-like 

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Top 50 coexpressed genes to 100253544 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100253544 (vvi-r.5 coexpression data)

CoexMap"100253544"


vviLOC100253544 | Entrez gene ID : 100253544      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 2 2 1 1 2 3 1 1 1 2 2 2 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_002278231.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1,  vacu 1,  golg 1  (predict for XP_002278231.1)
Subcellular
localization
TargetP
mito 4,  chlo 3  (predict for XP_002278231.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
100253544
vvi-u.5
for
100253544
ath-u.5
for
AT2G40400
ath-u.5
for
AT3G56140
gma-u.5
for
100790538
gma-u.5
for
100810366
bra-r.6
for
103865793
bra-r.6
for
103830036
ppo-u.5
for
7462105
mtr-u.5
for
11418002
ghi-r.1
for
107954278
ghi-r.1
for
107953083
bna-r.1
for
106391587
bna-r.1
for
106382031
bna-r.1
for
106447534
cit-r.1
for
102607971
sly-u.5
for
101264128
sot-r.1
for
102605434
nta-r.1
for
107764337
nta-r.1
for
107779932
osa-u.5
for
107278649
osa-u.5
for
4327520
zma-u.5
for
100191628
zma-u.5
for
100274936
tae-r.2
for
123079613
tae-r.2
for
123071256
tae-r.2
for
123062468
hvu-r.1
for
123444996
hvu-r.1
for
123444827
sbi-r.1
for
8076990
sbi-r.1
for
8085412
bdi-r.1
for
100846187
bdi-r.1
for
100846697


Ortholog ID: 5708
Species vvi ath ath gma gma bra bra ppo mtr ghi ghi bna bna bna cit sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC100253544 AT2G40400 AT3G56140 LOC100790538 LOC100810366 LOC103865793 LOC103830036 LOC7462105 LOC11418002 LOC107954278 LOC107953083 LOC106391587 LOC106447534 LOC125576606 LOC102607971 LOC101264128 LOC102605434 LOC107764337 LOC107779932 LOC107278649 LOC4327520 LOC100191628 LOC100274936 LOC123071256 LOC123182355 LOC123136830 LOC123444996 LOC123444827 LOC8076990 LOC8085412 LOC100846187 LOC100846697
Function* protein RETICULATA-RELATED 5, chloroplastic DUF399 family protein, putative (DUF399 and DUF3411) DUF399 family protein, putative (DUF399 and DUF3411) protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 6, chloroplastic protein RETICULATA-RELATED 6, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic-like protein RETICULATA-RELATED 6, chloroplastic protein RETICULATA-RELATED 5, chloroplastic-like protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic-like protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic Protein RETICULATA-RELATED 6 chloroplastic uncharacterized LOC100274936 protein RETICULATA-RELATED 6, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 6, chloroplastic-like protein RETICULATA-RELATED 5, chloroplastic-like protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 5, chloroplastic protein RETICULATA-RELATED 6, chloroplastic protein RETICULATA-RELATED 5, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
vvi04146 Peroxisome 2
vvi00561 Glycerolipid metabolism 2
vvi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 3
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 7
ath00640 Propanoate metabolism 4
ath00785 Lipoic acid metabolism 3
ath01210 2-Oxocarboxylic acid metabolism 3
ath00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00620 Pyruvate metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00650 Butanoate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 3
mtr00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00760 Nicotinate and nicotinamide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00760 Nicotinate and nicotinamide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
bna00350 Tyrosine metabolism 6
bna00360 Phenylalanine metabolism 6
bna01240 Biosynthesis of cofactors 4
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta04712 Circadian rhythm - plant 2
nta00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00260 Glycine, serine and threonine metabolism 3
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00670 One carbon pool by folate 3
osa01200 Carbon metabolism 3
osa00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae03010 Ribosome 3
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00290 Valine, leucine and isoleucine biosynthesis 2
sbi00620 Pyruvate metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi01230 Biosynthesis of amino acids 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
sbi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00270 Cysteine and methionine metabolism 2
bdi00350 Tyrosine metabolism 2
bdi00360 Phenylalanine metabolism 2
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bdi00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 6
bdi01200 Carbon metabolism 6
bdi00710 Carbon fixation by Calvin cycle 3
bdi04146 Peroxisome 2
bdi00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100253544 818633 824780 100790538 100810366 103865793 103830036 7462105 11418002 107954278 107953083 106391587 106447534 125576606 102607971 101264128 102605434 107764337 107779932 107278649 4327520 100191628 100274936 123071256 123182355 123136830 123444996 123444827 8076990 8085412 100846187 100846697
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