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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   100254316   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 vvi-u.5   100254316   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 sly-u.5   101244753   pentatricopeptide repeat-containing protein At1g31430-like 
 sot-r.1   102590405   pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like 
 nta-r.1   107805083   pentatricopeptide repeat-containing protein At1g31430-like 
 nta-r.1   107817669   pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like 
 osa-u.5   4346177   DNA polymerase zeta processivity subunit 
 zma-u.5   100275453   uncharacterized LOC100275453 
 tae-r.2   123157852   DNA polymerase zeta processivity subunit 
 hvu-r.1   123407728   DNA polymerase zeta processivity subunit 
 sbi-r.1   8060922   DNA polymerase zeta processivity subunit 
 bdi-r.1   100846422   pentatricopeptide repeat-containing protein At2g22410, mitochondrial 

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Top 50 coexpressed genes to 100254316 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100254316 (vvi-r.5 coexpression data)

CoexMap"100254316"


vviLOC100254316 | Entrez gene ID : 100254316    
Species vvi sly sot nta osa zma tae hvu sbi bdi gma cit mtr bra ath bna ppo ghi cre
Paralog 2 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_019082003.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 5,  mito 4  (predict for XP_019082003.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_019082003.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
100254316
vvi-u.5
for
100254316
sly-u.5
for
101244753
sot-r.1
for
102590405
nta-r.1
for
107805083
nta-r.1
for
107817669
osa-u.5
for
4346177
zma-u.5
for
100275453
tae-r.2
for
123157852
hvu-r.1
for
123407728
sbi-r.1
for
8060922
bdi-r.1
for
100846422


Ortholog ID: 14912
Species vvi sly sot nta nta osa zma tae hvu sbi bdi
Symbol LOC100254316 LOC101244753 LOC102590405 LOC107805083 LOC107817669 LOC4346177 LOC100275453 LOC123157852 LOC123407728 LOC8060922 LOC100846422
Function* pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At1g31430-like pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like pentatricopeptide repeat-containing protein At1g31430-like pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like DNA polymerase zeta processivity subunit uncharacterized LOC100275453 DNA polymerase zeta processivity subunit DNA polymerase zeta processivity subunit DNA polymerase zeta processivity subunit pentatricopeptide repeat-containing protein At2g22410, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03022 Basal transcription factors 2
sbi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100254316 101244753 102590405 107805083 107817669 4346177 100275453 123157852 123407728 8060922 100846422
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