ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-r.5	100259999	membrane-anchored ubiquitin-fold protein 4
vvi-u.5	100259999	membrane-anchored ubiquitin-fold protein 4
vvi-m.5	100259999	membrane-anchored ubiquitin-fold protein 4
vvi-u.5	100242612	membrane-anchored ubiquitin-fold protein 3
vvi-u.5	100243670	membrane-anchored ubiquitin-fold protein 3
vvi-u.5	100245604	membrane-anchored ubiquitin-fold protein 3
ath-u.5	MUB1	membrane-anchored ubiquitin-fold protein 1 precursor
ath-u.5	MUB4	membrane-anchored ubiquitin-fold protein 4 precursor
ath-u.5	ATGP4	Ubiquitin family protein
gma-u.5	100782656	membrane-anchored ubiquitin-fold protein 1
gma-u.5	100500090	uncharacterized LOC100500090
gma-u.5	100306698	ubiquitin-like protein
bra-r.6	103858935	membrane-anchored ubiquitin-fold protein 1
bra-r.6	103861519	membrane-anchored ubiquitin-fold protein 3
bra-r.6	103836972	membrane-anchored ubiquitin-fold protein 4
ppo-u.5	7467876	membrane-anchored ubiquitin-fold protein 2
ppo-u.5	7456624	membrane-anchored ubiquitin-fold protein 3
ppo-u.5	7472614	membrane-anchored ubiquitin-fold protein 2
mtr-u.5	11437836	membrane-anchored ubiquitin-fold protein 4
mtr-u.5	25501988	membrane-anchored ubiquitin-fold protein 3
ghi-r.1	107918517	membrane-anchored ubiquitin-fold protein 3
ghi-r.1	107924115	membrane-anchored ubiquitin-fold protein 2
bna-r.1	106438913	membrane-anchored ubiquitin-fold protein 1
bna-r.1	106425641	membrane-anchored ubiquitin-fold protein 6
cit-r.1	102622832	membrane-anchored ubiquitin-fold protein 6
cit-r.1	102620784	membrane-anchored ubiquitin-fold protein 4
cit-r.1	102615736	membrane-anchored ubiquitin-fold protein 1
sly-u.5	101262467	membrane-anchored ubiquitin-fold protein 4
sly-u.5	101252160	membrane-anchored ubiquitin-fold protein 6
sly-u.5	101246014	membrane-anchored ubiquitin-fold protein 4
sot-r.1	102582613	membrane-anchored ubiquitin-fold protein 3-like
sot-r.1	102584002	membrane-anchored ubiquitin-fold protein 4
sot-r.1	102591942	membrane-anchored ubiquitin-fold protein 2
nta-r.1	107764192	membrane-anchored ubiquitin-fold protein 3
nta-r.1	107773539	membrane-anchored ubiquitin-fold protein 3
nta-r.1	107777393	membrane-anchored ubiquitin-fold protein 2
osa-u.5	4333160	membrane-anchored ubiquitin-fold protein 1-like
osa-u.5	4330742	membrane-anchored ubiquitin-fold protein 3-like
osa-u.5	4335685	membrane-anchored ubiquitin-fold protein 4-like
zma-u.5	100285333	uncharacterized LOC100285333
zma-u.5	100283636	ATGP4
zma-u.5	100193576	uncharacterized LOC100193576
tae-r.2	123138201	membrane-anchored ubiquitin-fold protein 3
tae-r.2	123169263	membrane-anchored ubiquitin-fold protein 3
tae-r.2	123147848	membrane-anchored ubiquitin-fold protein 3
hvu-r.1	123413285	membrane-anchored ubiquitin-fold protein 3-like
hvu-r.1	123402749	membrane-anchored ubiquitin-fold protein 3
hvu-r.1	123426562	membrane-anchored ubiquitin-fold protein 4
sbi-r.1	8066034	membrane-anchored ubiquitin-fold protein 1
sbi-r.1	8065511	membrane-anchored ubiquitin-fold protein 3
sbi-r.1	110434933	membrane-anchored ubiquitin-fold protein 3
bdi-r.1	100827383	membrane-anchored ubiquitin-fold protein 3
bdi-r.1	100838670	membrane-anchored ubiquitin-fold protein 3
bdi-r.1	100842505	membrane-anchored ubiquitin-fold protein 4
cre-r.1	CHLRE_06g260400v5	uncharacterized protein

Top 50 coexpressed genes to 100259999 (vvi-r.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100259999 (vvi-r.5 coexpression data)

CoexMap"100259999"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4232 genes)

IEA

Protein

XP_002272710.1 [sequence] [blastp]
XP_010660725.1 [sequence] [blastp]
XP_059598687.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 1, cyto_E.R. 1, chlo 1, extr 1, cysk_nucl 1	(predict for XP_002272710.1)
cyto 4, nucl 1, cyto_E.R. 1, chlo 1, extr 1, cysk_nucl 1	(predict for XP_010660725.1)
cyto 4, nucl 1, cyto_E.R. 1, chlo 1, extr 1, cysk_nucl 1	(predict for XP_059598687.1)

Subcellular
localization
TargetP

other 8	(predict for XP_002272710.1)
other 8	(predict for XP_010660725.1)
other 8	(predict for XP_059598687.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-r.5 for 100259999	vvi-u.5 for 100259999	vvi-m.5 for 100259999	vvi-u.5 for 100242612	vvi-u.5 for 100243670	vvi-u.5 for 100245604	ath-u.5 for MUB1	ath-u.5 for MUB4	ath-u.5 for ATGP4	gma-u.5 for 100782656	gma-u.5 for 100500090	gma-u.5 for 100306698	bra-r.6 for 103858935	bra-r.6 for 103861519	bra-r.6 for 103836972	ppo-u.5 for 7467876	ppo-u.5 for 7456624	ppo-u.5 for 7472614	mtr-u.5 for 11437836	mtr-u.5 for 25501988	ghi-r.1 for 107918517	ghi-r.1 for 107924115	bna-r.1 for 106438913	bna-r.1 for 106425641	cit-r.1 for 102622832	cit-r.1 for 102620784	cit-r.1 for 102615736	sly-u.5 for 101262467	sly-u.5 for 101252160	sly-u.5 for 101246014	sot-r.1 for 102582613	sot-r.1 for 102584002	sot-r.1 for 102591942	nta-r.1 for 107764192	nta-r.1 for 107773539	nta-r.1 for 107777393	osa-u.5 for 4333160	osa-u.5 for 4330742	osa-u.5 for 4335685	zma-u.5 for 100285333	zma-u.5 for 100283636	zma-u.5 for 100193576	tae-r.2 for 123138201	tae-r.2 for 123169263	tae-r.2 for 123147848	hvu-r.1 for 123413285	hvu-r.1 for 123402749	hvu-r.1 for 123426562	sbi-r.1 for 8066034	sbi-r.1 for 8065511	sbi-r.1 for 110434933	bdi-r.1 for 100827383	bdi-r.1 for 100838670	bdi-r.1 for 100842505	cre-r.1 for CHLRE_06g260400v5

Ortholog

Ortholog ID: 388

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC100259999

LOC100242612

LOC100245604

MUB1

MUB4

Function^*

membrane-anchored ubiquitin-fold protein 4

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 1 precursor

membrane-anchored ubiquitin-fold protein 4 precursor

ubiquitin-like protein

membrane-anchored ubiquitin-fold protein 3-like

membrane-anchored ubiquitin-fold protein 1-like

membrane-anchored ubiquitin-fold protein 2

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 2

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 4

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 6-like

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 1

membrane-anchored ubiquitin-fold protein 6

membrane-anchored ubiquitin-fold protein 4

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 6

membrane-anchored ubiquitin-fold protein 4

membrane-anchored ubiquitin-fold protein 2

membrane-anchored ubiquitin-fold protein 3-like

membrane-anchored ubiquitin-fold protein 4

membrane-anchored ubiquitin-fold protein 6

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 6

membrane-anchored ubiquitin-fold protein 2

membrane-anchored ubiquitin-fold protein 1-like

membrane-anchored ubiquitin-fold protein 4-like

membrane-anchored ubiquitin-fold protein 2-like

uncharacterized LOC100193576

membrane-anchored ubiquitin-fold protein 1

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 3-like

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 4

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 4

membrane-anchored ubiquitin-fold protein 3

membrane-anchored ubiquitin-fold protein 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04130	SNARE interactions in vesicular transport	3
vvi04120	Ubiquitin mediated proteolysis	3
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	3
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	5
bra04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00240	Pyrimidine metabolism	2
bra00410	beta-Alanine metabolism	2
bra00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00510	N-Glycan biosynthesis	2
ppo00513	Various types of N-glycan biosynthesis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	2
ppo04130	SNARE interactions in vesicular transport	2
ppo04144	Endocytosis	2
ppo04145	Phagosome	2
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00710	Carbon fixation by Calvin cycle	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00941	Flavonoid biosynthesis	2
ghi04712	Circadian rhythm - plant	2
ghi03015	mRNA surveillance pathway	2
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3
sot03050	Proteasome	2
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	3
nta04130	SNARE interactions in vesicular transport	2
nta04626	Plant-pathogen interaction	2
nta04144	Endocytosis	2
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	6
nta03272	Virion - Hepatitis viruses	3
nta03250	Viral life cycle - HIV-1	2
nta00330	Arginine and proline metabolism	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00250	Alanine, aspartate and glutamate metabolism	4
osa00230	Purine metabolism	2
osa00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	7
zma04148	Efferocytosis	3
zma03250	Viral life cycle - HIV-1	3
zma03272	Virion - Hepatitis viruses	3
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04146	Peroxisome	3
tae04130	SNARE interactions in vesicular transport	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04146	Peroxisome	3
tae04130	SNARE interactions in vesicular transport	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu04145	Phagosome	2
hvu04148	Efferocytosis	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	5
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00592	alpha-Linolenic acid metabolism	2
bdi00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	4
bdi04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100259999

100242612

100245604

821307

822315

100306698

100785440

100802048

103856135

103834890

103862792

7467876

7456624

18107246

11437836

25501988

25501989

107901440

107949603

106438913

102622832

102620784

102606878

101252160

101246014

101265189

102582613

102584002

102587538

107773539

107792165

107826271

4333160

4335685

4340533

100193576

103636545

103639057

123147848

123162646

123128352

123413285

123402749

123426562

8065511

110434933

8070985

100827383

100838670

100842505

5722048

The preparation time of this page was 0.1 [sec].


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	3	3	2	2	2	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100259999 (vvi-r.5 coexpression data)

Top 50 enrichment test to 100259999 (vvi-r.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**