ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100256182	transmembrane CLPTM1 family protein-like
vvi-r.5	100256182	transmembrane CLPTM1 family protein-like
vvi-m.5	100256182	transmembrane CLPTM1 family protein-like
ath-u.5	AT5G08500	Transmembrane CLPTM1 family protein
ath-u.5	AT5G23575	Transmembrane CLPTM1 family protein
gma-u.5	100804885	CLPTM1-like membrane protein cnrB
gma-u.5	100791491	CLPTM1-like membrane protein cnrB
bra-r.6	103865543	cleft lip and palate transmembrane protein 1 homolog
bra-r.6	103847159	cleft lip and palate transmembrane protein 1 homolog
ppo-u.5	7472586	uncharacterized LOC7472586
ppo-u.5	112325573	uncharacterized LOC112325573
ppo-u.5	7484098	uncharacterized LOC7484098
mtr-u.5	11430464	cleft lip and palate transmembrane protein 1 homolog
ghi-r.1	121216277	CLPTM1-like membrane protein cnrB
ghi-r.1	107937646	CLPTM1-like membrane protein cnrB
ghi-r.1	107931293	cleft lip and palate transmembrane protein 1
bna-r.1	106428447	cleft lip and palate transmembrane protein 1 homolog
bna-r.1	125577736	cleft lip and palate transmembrane protein 1 homolog
bna-r.1	106418997	cleft lip and palate transmembrane protein 1 homolog
cit-r.1	102610010	uncharacterized LOC102610010
sly-u.5	101245548	uncharacterized LOC101245548
sot-r.1	102605505	cleft lip and palate transmembrane protein 1 homolog
nta-r.1	107802894	uncharacterized LOC107802894
nta-r.1	107798525	uncharacterized LOC107798525
osa-u.5	4335933	uncharacterized LOC4335933
zma-u.5	100272567	uncharacterized LOC100272567
zma-u.5	100381598	uncharacterized LOC100381598
tae-r.2	123045539	CLPTM1-like membrane protein cnrB
tae-r.2	123053384	CLPTM1-like membrane protein cnrB
tae-r.2	123189291	CLPTM1-like membrane protein cnrB
hvu-r.1	123426792	CLPTM1-like membrane protein cnrB
sbi-r.1	8080340	CLPTM1-like membrane protein cnrB
bdi-r.1	100820860	CLPTM1-like membrane protein cnrB
cre-r.1	CHLRE_09g397900v5	uncharacterized protein

Top 50 coexpressed genes to 100256182 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100256182 (vvi-u.5 coexpression data)

CoexMap"100256182"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0012505 [list] [network] endomembrane system	(1015 genes)	IEA
GO:0016020 [list] [network] membrane	(2991 genes)	IEA

GO MF

Protein

XP_002271151.1 [sequence] [blastp]
XP_010653046.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, plas 4, nucl_plas 4	(predict for XP_002271151.1)
nucl 4, plas 4, cyto 1	(predict for XP_010653046.1)

Subcellular
localization
TargetP

other 8	(predict for XP_002271151.1)
other 8	(predict for XP_010653046.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100256182	vvi-r.5 for 100256182	vvi-m.5 for 100256182	ath-u.5 for AT5G08500	ath-u.5 for AT5G23575	gma-u.5 for 100804885	gma-u.5 for 100791491	bra-r.6 for 103865543	bra-r.6 for 103847159	ppo-u.5 for 7472586	ppo-u.5 for 112325573	ppo-u.5 for 7484098	mtr-u.5 for 11430464	ghi-r.1 for 121216277	ghi-r.1 for 107937646	ghi-r.1 for 107931293	bna-r.1 for 106428447	bna-r.1 for 125577736	bna-r.1 for 106418997	cit-r.1 for 102610010	sly-u.5 for 101245548	sot-r.1 for 102605505	nta-r.1 for 107802894	nta-r.1 for 107798525	osa-u.5 for 4335933	zma-u.5 for 100272567	zma-u.5 for 100381598	tae-r.2 for 123045539	tae-r.2 for 123053384	tae-r.2 for 123189291	hvu-r.1 for 123426792	sbi-r.1 for 8080340	bdi-r.1 for 100820860	cre-r.1 for CHLRE_09g397900v5

Ortholog

Ortholog ID: 5573

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

transmembrane CLPTM1 family protein-like

Transmembrane CLPTM1 family protein

CLPTM1-like membrane protein cnrB

cleft lip and palate transmembrane protein 1 homolog

uncharacterized LOC7472586

uncharacterized LOC112325573

uncharacterized LOC7484098

cleft lip and palate transmembrane protein 1 homolog

CLPTM1-like membrane protein cnrB

cleft lip and palate transmembrane protein 1

cleft lip and palate transmembrane protein 1 homolog

uncharacterized LOC102610010

uncharacterized LOC101245548

cleft lip and palate transmembrane protein 1 homolog

uncharacterized LOC107802894

uncharacterized LOC107798525

uncharacterized LOC4335933

uncharacterized LOC100272567

uncharacterized LOC100381598

CLPTM1-like membrane protein cnrB

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	4
vvi01200	Carbon metabolism	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04517	IgSF CAM signaling	2
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	4
gma00970	Aminoacyl-tRNA biosynthesis	2
gma00020	Citrate cycle (TCA cycle)	2
gma00785	Lipoic acid metabolism	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	6
gma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo01200	Carbon metabolism	3
ppo00030	Pentose phosphate pathway	2
ppo00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3
mtr03018	RNA degradation	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00051	Fructose and mannose metabolism	4
ghi00052	Galactose metabolism	4
ghi00500	Starch and sucrose metabolism	4
ghi00520	Amino sugar and nucleotide sugar metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00051	Fructose and mannose metabolism	4
ghi00052	Galactose metabolism	4
ghi00500	Starch and sucrose metabolism	4
ghi00520	Amino sugar and nucleotide sugar metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00051	Fructose and mannose metabolism	4
ghi00052	Galactose metabolism	4
ghi00500	Starch and sucrose metabolism	4
ghi00520	Amino sugar and nucleotide sugar metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00051	Fructose and mannose metabolism	2
nta00052	Galactose metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta04712	Circadian rhythm - plant	4
nta00010	Glycolysis / Gluconeogenesis	2
nta00051	Fructose and mannose metabolism	2
nta00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	6
zma00510	N-Glycan biosynthesis	5
zma00513	Various types of N-glycan biosynthesis	5
zma00061	Fatty acid biosynthesis	2
zma00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	4
zma04141	Protein processing in endoplasmic reticulum	3
zma00510	N-Glycan biosynthesis	2
zma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	3
tae00030	Pentose phosphate pathway	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	3
tae00030	Pentose phosphate pathway	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi00020	Citrate cycle (TCA cycle)	2
sbi00480	Glutathione metabolism	2
sbi01200	Carbon metabolism	2
sbi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	6
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00514	Other types of O-glycan biosynthesis	3
cre00240	Pyrimidine metabolism	2
cre01232	Nucleotide metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100256182

830749

832423

100804885

100791491

103865543

103847159

7472586

112325573

7484098

11430464

121216277

107937646

107930781

106428447

125577736

106348319

102610010

101245548

102605505

107802894

107798525

4335933

100272567

100381598

123045539

123053384

123189291

123426792

8080340

100820860

5720197

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Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	2	3	1	3	3	1	1	1	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100256182 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100256182 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**