ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100256628	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
vvi-r.5	100256628	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
vvi-u.5	100263339	regulator of ribonuclease-like protein 2
ath-u.5	AT3G02770	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
ath-u.5	AT5G16450	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
ath-u.5	AT5G56260	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
gma-u.5	100789908	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
gma-u.5	100783612	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
gma-u.5	100500019	ribonuclease activity regulator protein RraA-like
bra-r.6	103856943	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
bra-r.6	103856197	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
bra-r.6	103851838	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
ppo-u.5	7459221	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
ppo-u.5	18103576	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
ppo-u.5	18104232	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
mtr-u.5	11418846	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
mtr-u.5	25485895	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
mtr-u.5	11410288	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
ghi-r.1	107888923	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
ghi-r.1	107959403	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
ghi-r.1	107944541	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
bna-r.1	125574833	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
bna-r.1	125580819	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
bna-r.1	125583346	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
cit-r.1	102623345	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
cit-r.1	102619693	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
sly-u.5	101250931	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
sly-u.5	101260124	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
sot-r.1	102584527	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
sot-r.1	102599082	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
nta-r.1	107828905	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3
nta-r.1	107824552	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
nta-r.1	107818859	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
osa-u.5	4330812	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
osa-u.5	4324667	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
zma-u.5	100281920	uncharacterized LOC100281920
zma-u.5	100283919	regulator of ribonuclease activity A
hvu-r.1	123410661	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
hvu-r.1	123407443	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
sbi-r.1	8067495	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
sbi-r.1	8060782	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
sbi-r.1	110431029	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
bdi-r.1	100835195	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
bdi-r.1	100836315	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2
cre-r.1	CHLRE_13g578150v5	uncharacterized protein

Top 50 coexpressed genes to 100256628 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100256628 (vvi-u.5 coexpression data)

CoexMap"100256628"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0051252 [list] [network] regulation of RNA metabolic process

(1418 genes)

IEA

GO CC

GO MF

GO:0008428 [list] [network] ribonuclease inhibitor activity

(2 genes)

IEA

Protein

XP_002265968.1 [sequence] [blastp]
XP_010644701.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, chlo 1	(predict for XP_002265968.1)
cyto 8, chlo 1	(predict for XP_010644701.1)

Subcellular
localization
TargetP

other 5, chlo 3	(predict for XP_002265968.1)
other 5, chlo 3	(predict for XP_010644701.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100256628	vvi-r.5 for 100256628	vvi-u.5 for 100263339	ath-u.5 for AT3G02770	ath-u.5 for AT5G16450	ath-u.5 for AT5G56260	gma-u.5 for 100789908	gma-u.5 for 100783612	gma-u.5 for 100500019	bra-r.6 for 103856943	bra-r.6 for 103856197	bra-r.6 for 103851838	ppo-u.5 for 7459221	ppo-u.5 for 18103576	ppo-u.5 for 18104232	mtr-u.5 for 11418846	mtr-u.5 for 25485895	mtr-u.5 for 11410288	ghi-r.1 for 107888923	ghi-r.1 for 107959403	ghi-r.1 for 107944541	bna-r.1 for 125574833	bna-r.1 for 125580819	bna-r.1 for 125583346	cit-r.1 for 102623345	cit-r.1 for 102619693	sly-u.5 for 101250931	sly-u.5 for 101260124	sot-r.1 for 102584527	sot-r.1 for 102599082	nta-r.1 for 107828905	nta-r.1 for 107824552	nta-r.1 for 107818859	osa-u.5 for 4330812	osa-u.5 for 4324667	zma-u.5 for 100281920	zma-u.5 for 100283919	hvu-r.1 for 123410661	hvu-r.1 for 123407443	sbi-r.1 for 8067495	sbi-r.1 for 8060782	sbi-r.1 for 110431029	bdi-r.1 for 100835195	bdi-r.1 for 100836315	cre-r.1 for CHLRE_13g578150v5

Ortholog

Ortholog ID: 1661

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*