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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100264997   riboflavin biosynthesis protein PYRR, chloroplastic 
 vvi-r.5   100264997   riboflavin biosynthesis protein PYRR, chloroplastic 
 ath-u.5   PHS1   cytidine/deoxycytidylate deaminase family protein 
 gma-u.5   100812653   riboflavin biosynthesis protein PYRR, chloroplastic 
 gma-u.5   100801283   riboflavin biosynthesis protein PYRR, chloroplastic 
 bra-r.6   103873252   riboflavin biosynthesis protein PYRR, chloroplastic 
 ppo-u.5   7459224   riboflavin biosynthesis protein PYRR, chloroplastic 
 mtr-u.5   25498913   riboflavin biosynthesis protein PYRR, chloroplastic 
 ghi-r.1   107909100   riboflavin biosynthesis protein PYRR, chloroplastic 
 ghi-r.1   107928372   riboflavin biosynthesis protein PYRR, chloroplastic 
 bna-r.1   106371360   riboflavin biosynthesis protein PYRR, chloroplastic 
 bna-r.1   106435278   riboflavin biosynthesis protein PYRR, chloroplastic-like 
 cit-r.1   102625459   riboflavin biosynthesis protein PYRR, chloroplastic 
 sly-u.5   101248871   riboflavin biosynthesis protein PYRR, chloroplastic 
 sot-r.1   102578655   riboflavin biosynthesis protein PYRR, chloroplastic 
 nta-r.1   107825400   riboflavin biosynthesis protein PYRR, chloroplastic-like 
 nta-r.1   107780073   riboflavin biosynthesis protein PYRR, chloroplastic 
 osa-u.5   4329349   riboflavin biosynthesis protein PYRR, chloroplastic 
 tae-r.2   123139880   riboflavin biosynthesis protein PYRR, chloroplastic 
 tae-r.2   123129003   riboflavin biosynthesis protein PYRR, chloroplastic 
 tae-r.2   123146180   riboflavin biosynthesis protein PYRR, chloroplastic 
 hvu-r.1   123405875   riboflavin biosynthesis protein PYRR, chloroplastic 
 sbi-r.1   8056667   riboflavin biosynthesis protein PYRR, chloroplastic 
 bdi-r.1   100843272   riboflavin biosynthesis protein PYRR, chloroplastic 
 cre-r.1   CHLRE_17g728950v5   uncharacterized protein 

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Top 50 coexpressed genes to 100264997 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100264997 (vvi-u.5 coexpression data)

CoexMap"100264997"


vviLOC100264997 | Entrez gene ID : 100264997      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa tae hvu sbi bdi cre zma
Paralog 2 1 2 1 1 1 2 2 1 1 1 2 1 3 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00740 [list] [network] Riboflavin metabolism (17 genes)
vvi01240 [list] [network] Biosynthesis of cofactors (226 genes)
GO BP
GO:0009231 [list] [network] riboflavin biosynthetic process  (11 genes)  IEA  
GO CC
GO MF
GO:0008703 [list] [network] 5-amino-6-(5-phosphoribosylamino)uracil reductase activity  (1 genes)  IEA  
GO:0008835 [list] [network] diaminohydroxyphosphoribosylaminopyrimidine deaminase activity  (2 genes)  IEA  
GO:0050661 [list] [network] NADP binding  (59 genes)  IEA  
Protein XP_003631864.1 [sequence] [blastp]
XP_019075163.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 2,  extr 1,  cyto_nucl 1  (predict for XP_003631864.1)
chlo 6,  cyto 2,  nucl 1,  extr 1,  vacu 1  (predict for XP_019075163.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_003631864.1)
chlo 7  (predict for XP_019075163.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100264997
vvi-r.5
for
100264997
ath-u.5
for
PHS1
gma-u.5
for
100812653
gma-u.5
for
100801283
bra-r.6
for
103873252
ppo-u.5
for
7459224
mtr-u.5
for
25498913
ghi-r.1
for
107909100
ghi-r.1
for
107928372
bna-r.1
for
106371360
bna-r.1
for
106435278
cit-r.1
for
102625459
sly-u.5
for
101248871
sot-r.1
for
102578655
nta-r.1
for
107825400
nta-r.1
for
107780073
osa-u.5
for
4329349
tae-r.2
for
123139880
tae-r.2
for
123129003
tae-r.2
for
123146180
hvu-r.1
for
123405875
sbi-r.1
for
8056667
bdi-r.1
for
100843272
cre-r.1
for
CHLRE_17g728950v5


Ortholog ID: 10810
Species vvi ath gma gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa tae tae tae hvu sbi bdi cre
Symbol LOC100264997 PHS1 LOC100812653 LOC100801283 LOC103873252 LOC7459224 LOC25498913 LOC107909100 LOC107928372 LOC106371360 LOC106435278 LOC102625459 LOC101248871 LOC102578655 LOC107825400 LOC107780073 LOC4329349 LOC123139880 LOC123129003 LOC123146180 LOC123405875 LOC8056667 LOC100843272 CHLRE_17g728950v5
Function* riboflavin biosynthesis protein PYRR, chloroplastic cytidine/deoxycytidylate deaminase family protein riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic-like riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic-like riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic riboflavin biosynthesis protein PYRR, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03060 Protein export 3
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00020 Citrate cycle (TCA cycle) 2
bra00620 Pyruvate metabolism 2
bra00785 Lipoic acid metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 3
mtr01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna00740 Riboflavin metabolism 2
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
nta00071 Fatty acid degradation 2
nta00592 alpha-Linolenic acid metabolism 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
nta03015 mRNA surveillance pathway 2
nta00740 Riboflavin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 6
tae00860 Porphyrin metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03010 Ribosome 3
tae00740 Riboflavin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 6
tae00970 Aminoacyl-tRNA biosynthesis 5
tae00860 Porphyrin metabolism 3
tae00740 Riboflavin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 7
tae00860 Porphyrin metabolism 4
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03010 Ribosome 3
tae00740 Riboflavin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01210 2-Oxocarboxylic acid metabolism 3
bdi01230 Biosynthesis of amino acids 3
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00740 Riboflavin metabolism 2
cre01240 Biosynthesis of cofactors 2
cre00260 Glycine, serine and threonine metabolism 2
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100264997 823893 100812653 100801283 103873252 7459224 25498913 107909100 107928372 106371360 106435278 102625459 101248871 102578655 107825400 107780073 4329349 123139880 123129003 123146180 123405875 8056667 100843272 5722836
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