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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-m.5   542007   SSRP1 protein 
 zma-u.5   542007   SSRP1 protein 
 zma-r.6   542007   SSRP1 protein 
 zma-u.5   103630072   FACT complex subunit SSRP1-B 
 sbi-r.1   8080975   FACT complex subunit SSRP1-B 
 sbi-r.1   8084374   FACT complex subunit SSRP1 
 osa-u.5   4325652   FACT complex subunit SSRP1-A-like 
 osa-u.5   4337994   FACT complex subunit SSRP1-B-like 
 tae-r.2   123077475   FACT complex subunit SSRP1-A 
 tae-r.2   123040911   FACT complex subunit SSRP1-B 
 tae-r.2   123060408   FACT complex subunit SSRP1-A 
 hvu-r.1   123427125   FACT complex subunit SSRP1-B-like 
 bdi-r.1   100836453   FACT complex subunit SSRP1-B 
 bdi-r.1   100822727   FACT complex subunit SSRP1-A 
 ath-u.5   HMG   high mobility group 
 gma-u.5   100805034   FACT complex subunit SSRP1 
 gma-u.5   100780190   FACT complex subunit SSRP1 
 sly-u.5   101259798   FACT complex subunit SSRP1 
 bra-r.6   103854188   FACT complex subunit SSRP1 
 bra-r.6   103875134   FACT complex subunit SSRP1 
 vvi-u.5   100249277   FACT complex subunit SSRP1 
 ppo-u.5   7482452   FACT complex subunit SSRP1 
 ppo-u.5   7472609   FACT complex subunit SSRP1 
 mtr-u.5   25482152   FACT complex subunit SSRP1 
 mtr-u.5   11421264   FACT complex subunit SSRP1 
 ghi-r.1   107911801   FACT complex subunit SSRP1 
 ghi-r.1   107892362   FACT complex subunit SSRP1 
 ghi-r.1   107892338   FACT complex subunit SSRP1 
 bna-r.1   111209879   FACT complex subunit SSRP1-like 
 bna-r.1   125606444   FACT complex subunit SSRP1 
 bna-r.1   106349159   FACT complex subunit SSRP1-like 
 sot-r.1   102593838   FACT complex subunit SSRP1-like 
 sot-r.1   102594303   FACT complex subunit SSRP1-like 
 cit-r.1   102622679   FACT complex subunit SSRP1 
 nta-r.1   107808145   FACT complex subunit SSRP1 
 nta-r.1   107761723   FACT complex subunit SSRP1 
 cre-r.1   CHLRE_01g029450v5   uncharacterized protein 

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Top 50 coexpressed genes to 542007 (zma-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542007 (zma-m.5 coexpression data)

CoexMap"542007"


zmaLOC542007 | Entrez gene ID : 542007      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 2 2 3 1 2 1 2 1 2 1 2 2 3 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0035101 [list] [network] FACT complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0031491 [list] [network] nucleosome binding  (26 genes)  IEA  
GO:0042393 [list] [network] histone binding  (70 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein NP_001334293.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 2  (predict for NP_001334293.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001334293.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-m.5
for
542007
zma-u.5
for
542007
zma-r.6
for
542007
zma-u.5
for
103630072
sbi-r.1
for
8080975
sbi-r.1
for
8084374
osa-u.5
for
4325652
osa-u.5
for
4337994
tae-r.2
for
123077475
tae-r.2
for
123040911
tae-r.2
for
123060408
hvu-r.1
for
123427125
bdi-r.1
for
100836453
bdi-r.1
for
100822727
ath-u.5
for
HMG
gma-u.5
for
100805034
gma-u.5
for
100780190
sly-u.5
for
101259798
bra-r.6
for
103854188
bra-r.6
for
103875134
vvi-u.5
for
100249277
ppo-u.5
for
7482452
ppo-u.5
for
7472609
mtr-u.5
for
25482152
mtr-u.5
for
11421264
ghi-r.1
for
107911801
ghi-r.1
for
107892362
ghi-r.1
for
107892338
bna-r.1
for
111209879
bna-r.1
for
125606444
bna-r.1
for
106349159
sot-r.1
for
102593838
sot-r.1
for
102594303
cit-r.1
for
102622679
nta-r.1
for
107808145
nta-r.1
for
107761723
cre-r.1
for
CHLRE_01g029450v5


Ortholog ID: 4395
Species zma zma sbi sbi osa osa tae tae tae hvu bdi bdi ath gma gma sly bra bra vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit nta nta cre
Symbol LOC542007 LOC103630072 LOC8080975 LOC8084374 LOC4325652 LOC4337994 LOC123077475 LOC123068950 LOC123115141 LOC123427125 LOC100836453 LOC100822727 HMG LOC100805034 LOC100780190 LOC101259798 LOC103854188 LOC103875134 LOC100249277 LOC7482452 LOC7472609 LOC25482152 LOC11421264 LOC107911801 LOC107892338 LOC107924261 LOC125606444 LOC106371129 LOC106421606 LOC102593838 LOC102594303 LOC102622679 LOC107808145 LOC107761723 CHLRE_01g029450v5
Function* SSRP1 protein FACT complex subunit SSRP1-B FACT complex subunit SSRP1-B FACT complex subunit SSRP1 FACT complex subunit SSRP1-A-like FACT complex subunit SSRP1-B-like FACT complex subunit SSRP1-A FACT complex subunit SSRP1-A FACT complex subunit SSRP1-B FACT complex subunit SSRP1-B-like FACT complex subunit SSRP1-B FACT complex subunit SSRP1-A high mobility group FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1-like FACT complex subunit SSRP1-like FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 2
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03083 Polycomb repressive complex 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 3
ath04120 Ubiquitin mediated proteolysis 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03040 Spliceosome 4
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 4
ghi03030 DNA replication 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03050 Proteasome 2
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
cre03013 Nucleocytoplasmic transport 2
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542007 103630072 8080975 8084374 4325652 4337994 123077475 123068950 123115141 123427125 100836453 100822727 822505 100805034 100780190 101259798 103854188 103875134 100249277 7482452 7472609 25482152 11421264 107911801 107892338 107924261 125606444 106371129 106421606 102593838 102594303 102622679 107808145 107761723 5715346
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