ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-m.5	542129	protein YABBY 4
zma-u.5	542129	protein YABBY 4
zma-r.6	542129	protein YABBY 4
zma-u.5	542128	yabby14
zma-u.5	100193442	putative YABBY domain transcription factor family protein
sbi-r.1	8075170	protein YABBY 4
sbi-r.1	8083323	protein YABBY 5
osa-u.5	4330130	protein YABBY 4-like
osa-u.5	4336518	protein YABBY 5-like
tae-r.2	123054031	protein YABBY 5
tae-r.2	123041704	protein YABBY 5
tae-r.2	123127847	protein YABBY 4
bdi-r.1	100845555	protein YABBY 5
bdi-r.1	100831851	protein YABBY 4
ath-u.5	AFO	Plant-specific transcription factor YABBY family protein
gma-u.5	100781267	protein YABBY 3
gma-u.5	100786175	protein YABBY 7
gma-u.5	100794423	protein YABBY 5
sly-u.5	YABBY1a	axial regulator YABBY1a
sly-u.5	YABBY1b	axial regulator YABBY1b
bra-r.6	103866196	axial regulator YABBY 1
bra-r.6	103830131	axial regulator YABBY 1
vvi-u.5	100267708	protein YABBY 4
vvi-u.5	100243667	axial regulator YABBY 1
ppo-u.5	7488885	axial regulator YABBY 1
ppo-u.5	7465527	protein YABBY 4
ghi-r.1	107911900	axial regulator YABBY 1
ghi-r.1	107934031	axial regulator YABBY 1
ghi-r.1	107954568	axial regulator YABBY 1
bna-r.1	106371208	axial regulator YABBY 1-like
sot-r.1	102577797	protein YABBY 4
sot-r.1	102604849	axial regulator YABBY 1
cit-r.1	102614498	axial regulator YABBY 1
cit-r.1	102622362	axial regulator YABBY 1-like
nta-r.1	107798917	protein YABBY 4
nta-r.1	107802952	axial regulator YABBY 1
nta-r.1	107811927	axial regulator YABBY 1

Annotation

functional annotation

KEGG

GO BP

GO:1902183 [list] [network] regulation of shoot apical meristem development	(5 genes)	IEA
GO:2000024 [list] [network] regulation of leaf development	(5 genes)	IEA
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis	(6 genes)	IEA
GO:0010158 [list] [network] abaxial cell fate specification	(24 genes)	IEA
GO:0010154 [list] [network] fruit development	(37 genes)	IEA
GO:0045165 [list] [network] cell fate commitment	(41 genes)	IEA
GO:0007275 [list] [network] multicellular organism development	(243 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(3371 genes)

IEA

GO MF

Protein

NP_001306695.1 [sequence] [blastp]
XP_020393165.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 4, extr 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_001306695.1)
nucl 5, chlo 3, extr 2	(predict for XP_020393165.1)

Subcellular
localization
TargetP

scret 3, chlo 3	(predict for NP_001306695.1)
scret 3, chlo 3	(predict for XP_020393165.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-m.5 for 542129	zma-u.5 for 542129	zma-r.6 for 542129	zma-u.5 for 542128	zma-u.5 for 100193442	sbi-r.1 for 8075170	sbi-r.1 for 8083323	osa-u.5 for 4330130	osa-u.5 for 4336518	tae-r.2 for 123054031	tae-r.2 for 123041704	tae-r.2 for 123127847	bdi-r.1 for 100845555	bdi-r.1 for 100831851	ath-u.5 for AFO	gma-u.5 for 100781267	gma-u.5 for 100786175	gma-u.5 for 100794423	sly-u.5 for YABBY1a	sly-u.5 for YABBY1b	bra-r.6 for 103866196	bra-r.6 for 103830131	vvi-u.5 for 100267708	vvi-u.5 for 100243667	ppo-u.5 for 7488885	ppo-u.5 for 7465527	ghi-r.1 for 107911900	ghi-r.1 for 107934031	ghi-r.1 for 107954568	bna-r.1 for 106371208	sot-r.1 for 102577797	sot-r.1 for 102604849	cit-r.1 for 102614498	cit-r.1 for 102622362	nta-r.1 for 107798917	nta-r.1 for 107802952	nta-r.1 for 107811927

Ortholog

Ortholog ID: 2893

Species

zma

sbi

osa

tae

bdi

ath

gma

sly

bra

vvi

ppo

ghi

bna

sot

cit

nta

Symbol

AFO

FILA

YABBY1a

YABBY1b

Function^*

protein YABBY 4

yabby14

putative YABBY domain transcription factor family protein

protein YABBY 4

protein YABBY 5

protein YABBY 4-like

protein YABBY 5-like

protein YABBY 4

protein YABBY 5

protein YABBY 4

Plant-specific transcription factor YABBY family protein

protein YABBY 3

protein YABBY 5

YABBY protein FILa

axial regulator YABBY1a

axial regulator YABBY1b

axial regulator YABBY 1

protein YABBY 4

axial regulator YABBY 1

protein YABBY 4

axial regulator YABBY 1

protein YABBY 4

axial regulator YABBY 1

axial regulator YABBY 1-like

protein YABBY 4

axial regulator YABBY 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi04016	MAPK signaling pathway - plant	2
ghi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3

Expression

Expression pattern

Entrez Gene ID^*

542129

542128

100193442

8075170

8083323

4330130

4336518

123127847

123137614

123189917

100845555

100831851

819127

100781267

100794423

100798441

101246760

101247051

103866196

103830131

100267708

100243667

7488885

7465527

107934031

121211138

107886089

106432121

102577797

102604849

102614498

102622362

107798917

107802952

107811927

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 542129 (zma-m.5 coexpression data)

Top 50 enrichment test to 542129 (zma-m.5 coexpression data)


Species	zma	sbi	osa	tae	bdi	ath	gma	sly	bra	vvi	ppo	ghi	bna	sot	cit	nta	mtr	cre	hvu
Paralog	5	2	2	3	2	1	3	2	2	2	2	3	1	2	2	3	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 542129 (zma-m.5 coexpression data)

Top 50 enrichment test to 542129 (zma-m.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**