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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-m.5   542624   cellulose synthase-4 
 zma-u.5   542624   cellulose synthase-4 
 zma-r.6   542624   cellulose synthase-4 
 zma-u.5   103647435   cellulose synthase A catalytic subunit 9 [UDP-forming] 
 zma-u.5   103647318   probable cellulose synthase A catalytic subunit 6 [UDP-forming] 
 zma-u.5   103638772   cellulose synthase A catalytic subunit 5 [UDP-forming] 
 sbi-r.1   8083471   cellulose synthase A catalytic subunit 5 [UDP-forming] 
 sbi-r.1   110432834   probable cellulose synthase A catalytic subunit 3 [UDP-forming] 
 sbi-r.1   8080953   probable cellulose synthase A catalytic subunit 1 [UDP-forming] 
 osa-u.5   4324625   cellulose synthase A catalytic subunit 4 [UDP-forming]-like 
 osa-u.5   4334515   probable cellulose synthase A catalytic subunit 2 [UDP-forming] 
 osa-u.5   4334710   probable cellulose synthase A catalytic subunit 5 [UDP-forming] 
 tae-r.2   542808   probable cellulose synthase A catalytic subunit 8 [UDP-forming] 
 tae-r.2   123062060   cellulose synthase A catalytic subunit 4 [UDP-forming] 
 tae-r.2   123051534   probable cellulose synthase A catalytic subunit 8 [UDP-forming] 
 hvu-r.1   123424693   probable cellulose synthase A catalytic subunit 8 [UDP-forming] 
 hvu-r.1   123426920   probable cellulose synthase A catalytic subunit 1 [UDP-forming] 
 hvu-r.1   123430548   cellulose synthase A catalytic subunit 7 [UDP-forming] 
 bdi-r.1   100832508   probable cellulose synthase A catalytic subunit 3 [UDP-forming] 
 bdi-r.1   100821105   probable cellulose synthase A catalytic subunit 1 [UDP-forming] 
 bdi-r.1   100822586   probable cellulose synthase A catalytic subunit 2 [UDP-forming] 
 ath-u.5   CESA10   cellulose synthase A catalytic subunit 3 UDP-forming-like protein 
 ath-u.5   IRX1   cellulose synthase family protein 
 ath-u.5   CESA1   cellulose synthase 1 
 gma-u.5   100794515   cellulose synthase A catalytic subunit 2 [UDP-forming] 
 gma-u.5   100793104   cellulose synthase A catalytic subunit 3 [UDP-forming] 
 gma-u.5   100790276   cellulose synthase A catalytic subunit 3 [UDP-forming] 
 sly-u.5   101246863   cellulose synthase A catalytic subunit 3 [UDP-forming] 
 sly-u.5   101267672   cellulose synthase A catalytic subunit 8 [UDP-forming] 
 sly-u.5   101265982   cellulose synthase A catalytic subunit 5 [UDP-forming] 
 bra-r.6   103851106   cellulose synthase A catalytic subunit 7 [UDP-forming] 
 bra-r.6   103873901   cellulose synthase A catalytic subunit 6 [UDP-forming] 
 bra-r.6   103855838   cellulose synthase A catalytic subunit 5 [UDP-forming] 
 vvi-u.5   100252166   probable cellulose synthase A catalytic subunit 8 [UDP-forming] 
 vvi-u.5   100264552   probable cellulose synthase A catalytic subunit 9 [UDP-forming]-like 
 vvi-u.5   100241197   cellulose synthase A catalytic subunit 4 [UDP-forming] 
 ppo-u.5   7471584   cellulose synthase A catalytic subunit 1 [UDP-forming] 
 ppo-u.5   7486352   cellulose synthase A catalytic subunit 2 [UDP-forming] 
 ppo-u.5   7496139   cellulose synthase A catalytic subunit 3 [UDP-forming] 
 mtr-u.5   25501056   cellulose synthase A catalytic subunit 3 [UDP-forming] 
 mtr-u.5   11438066   cellulose synthase A catalytic subunit 4 [UDP-forming] 
 mtr-u.5   11440412   cellulose synthase A catalytic subunit 7 [UDP-forming] 
 ghi-r.1   107925040   cellulose synthase A catalytic subunit 2 [UDP-forming] 
 ghi-r.1   107916504   cellulose synthase A catalytic subunit 4 [UDP-forming]-like 
 ghi-r.1   107915763   cellulose synthase A catalytic subunit 3 [UDP-forming] 
 bna-r.1   106423367   cellulose synthase A catalytic subunit 1 [UDP-forming]-like 
 bna-r.1   106422729   cellulose synthase A catalytic subunit 3 [UDP-forming] 
 bna-r.1   106415724   cellulose synthase A catalytic subunit 8 [UDP-forming] 
 sot-r.1   102577573   cellulose synthase A catalytic subunit 1 [UDP-forming] 
 sot-r.1   102597254   cellulose synthase A catalytic subunit 4 [UDP-forming] 
 sot-r.1   102591463   cellulose synthase A catalytic subunit 5 [UDP-forming] 
 cit-r.1   102611367   probable cellulose synthase A catalytic subunit 3 [UDP-forming] 
 cit-r.1   102629226   cellulose synthase A catalytic subunit 8 [UDP-forming] 
 cit-r.1   102619893   cellulose synthase A catalytic subunit 4 [UDP-forming] 
 nta-r.1   107795298   cellulose synthase A catalytic subunit 1 [UDP-forming] 
 nta-r.1   107790031   cellulose synthase A catalytic subunit 1 [UDP-forming] 

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Top 50 coexpressed genes to 542624 (zma-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542624 (zma-m.5 coexpression data)

CoexMap"542624"


zmaLOC542624 | Entrez gene ID : 542624      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 6 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030244 [list] [network] cellulose biosynthetic process  (47 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3751 genes)  IEA  
GO MF
GO:0016760 [list] [network] cellulose synthase (UDP-forming) activity  (36 genes)  IEA  
Protein NP_001105621.2 [sequence] [blastp]
XP_035816667.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 9,  nucl 1  (predict for NP_001105621.2)
plas 9  (predict for XP_035816667.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001105621.2)
scret 3  (predict for XP_035816667.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-m.5
for
542624
zma-u.5
for
542624
zma-r.6
for
542624
zma-u.5
for
103647435
zma-u.5
for
103647318
zma-u.5
for
103638772
sbi-r.1
for
8083471
sbi-r.1
for
110432834
sbi-r.1
for
8080953
osa-u.5
for
4324625
osa-u.5
for
4334515
osa-u.5
for
4334710
tae-r.2
for
542808
tae-r.2
for
123062060
tae-r.2
for
123051534
hvu-r.1
for
123424693
hvu-r.1
for
123426920
hvu-r.1
for
123430548
bdi-r.1
for
100832508
bdi-r.1
for
100821105
bdi-r.1
for
100822586
ath-u.5
for
CESA10
ath-u.5
for
IRX1
ath-u.5
for
CESA1
gma-u.5
for
100794515
gma-u.5
for
100793104
gma-u.5
for
100790276
sly-u.5
for
101246863
sly-u.5
for
101267672
sly-u.5
for
101265982
bra-r.6
for
103851106
bra-r.6
for
103873901
bra-r.6
for
103855838
vvi-u.5
for
100252166
vvi-u.5
for
100264552
vvi-u.5
for
100241197
ppo-u.5
for
7471584
ppo-u.5
for
7486352
ppo-u.5
for
7496139
mtr-u.5
for
25501056
mtr-u.5
for
11438066
mtr-u.5
for
11440412
ghi-r.1
for
107925040
ghi-r.1
for
107916504
ghi-r.1
for
107915763
bna-r.1
for
106423367
bna-r.1
for
106422729
bna-r.1
for
106415724
sot-r.1
for
102577573
sot-r.1
for
102597254
sot-r.1
for
102591463
cit-r.1
for
102611367
cit-r.1
for
102629226
cit-r.1
for
102619893
nta-r.1
for
107795298
nta-r.1
for
107790031


Ortholog ID: 120
Species zma zma zma sbi sbi sbi osa osa osa tae tae tae hvu hvu hvu bdi bdi bdi ath ath ath gma gma gma sly sly sly bra bra bra vvi vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot sot cit cit nta nta nta
Symbol LOC103647318 LOC542489 LOC542514 LOC8083471 LOC8080185 LOC8057104 LOC4324625 LOC4343049 LOC4337958 LOC123051534 LOC123079172 LOC123105553 LOC123426920 LOC123398002 LOC123401282 LOC100822586 LOC100833611 LOC100843814 IRX3 CESA4 CESA9 LOC100793104 LOC100790276 LOC100798759 LOC101265982 LOC101263703 LOC101246281 LOC103861013 LOC103855617 LOC103840033 LOC100252166 LOC100242715 LOC100256811 LOC7492474 LOC18098691 LOC7470198 LOC11440412 LOC11443809 LOC25499513 LOC107909647 LOC107953681 LOC107950592 LOC106411008 LOC106384921 LOC111203360 LOC102597254 LOC102578178 LOC102577470 LOC102629226 LOC102617105 LOC107771167 LOC107828491 LOC107817758
Function* probable cellulose synthase A catalytic subunit 6 [UDP-forming] cellulose synthase 3 cellulose synthase catalytic subunit 12 cellulose synthase A catalytic subunit 5 [UDP-forming] probable cellulose synthase A catalytic subunit 5 [UDP-forming] probable cellulose synthase A catalytic subunit 2 [UDP-forming] cellulose synthase A catalytic subunit 4 [UDP-forming]-like probable cellulose synthase A catalytic subunit 3 [UDP-forming] probable cellulose synthase A catalytic subunit 1 [UDP-forming] probable cellulose synthase A catalytic subunit 8 [UDP-forming] cellulose synthase A catalytic subunit 4 [UDP-forming] probable cellulose synthase A catalytic subunit 2 [UDP-forming] probable cellulose synthase A catalytic subunit 1 [UDP-forming] cellulose synthase A catalytic subunit 9 [UDP-forming] probable cellulose synthase A catalytic subunit 1 [UDP-forming] probable cellulose synthase A catalytic subunit 2 [UDP-forming] probable cellulose synthase A catalytic subunit 8 [UDP-forming] cellulose synthase A catalytic subunit 9 [UDP-forming] Cellulose synthase family protein cellulose synthase A4 cellulose synthase A9 cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 2 [UDP-forming] cellulose synthase A catalytic subunit 5 [UDP-forming] probable cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 4 [UDP-forming] cellulose synthase A catalytic subunit 8 [UDP-forming] cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 2 [UDP-forming] probable cellulose synthase A catalytic subunit 8 [UDP-forming] probable cellulose synthase A catalytic subunit 5 [UDP-forming] cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 2 [UDP-forming] probable cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 8 [UDP-forming] cellulose synthase A catalytic subunit 7 [UDP-forming] cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 8 [UDP-forming]-like cellulose synthase A catalytic subunit 7 [UDP-forming]-like cellulose synthase A catalytic subunit 2 [UDP-forming] cellulose synthase A catalytic subunit 4 [UDP-forming] cellulose synthase A catalytic subunit 5 [UDP-forming] cellulose synthase A catalytic subunit 1 [UDP-forming]-like cellulose synthase A catalytic subunit 4 [UDP-forming] cellulose synthase A catalytic subunit 7 [UDP-forming] cellulose synthase A catalytic subunit 2 [UDP-forming] cellulose synthase A catalytic subunit 8 [UDP-forming] cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 3 [UDP-forming] cellulose synthase A catalytic subunit 8 [UDP-forming] cellulose synthase A catalytic subunit 4 [UDP-forming]-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00941 Flavonoid biosynthesis 2
zma00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae04517 IgSF CAM signaling 3
tae05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04145 Phagosome 2
hvu04517 IgSF CAM signaling 2
hvu04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 4
bdi00460 Cyanoamino acid metabolism 2
bdi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly00510 N-Glycan biosynthesis 3
sly00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103647318 542489 542514 8083471 8080185 8057104 4324625 4343049 4337958 123051534 123079172 123105553 123426920 123398002 123401282 100822586 100833611 100843814 831608 834426 816713 100793104 100790276 100798759 101265982 101263703 101246281 103861013 103855617 103840033 100252166 100242715 100256811 7492474 18098691 7470198 11440412 11443809 25499513 107909647 107953681 107950592 106411008 106384921 111203360 102597254 102578178 102577470 102629226 102617105 107771167 107828491 107817758
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