ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-m.5	542702	phospholipase D
zma-u.5	542702	phospholipase D
zma-r.6	542702	phospholipase D
zma-u.5	100280155	phospholipase D family protein
zma-u.5	100279815	phospholipase D family protein
zma-u.5	103630082	phospholipase D alpha 1
sbi-r.1	110433400	phospholipase D alpha 1
sbi-r.1	8065077	phospholipase D alpha 2
osa-u.5	4341469	phospholipase D alpha 2-like
osa-u.5	4337942	phospholipase D alpha 1-like
osa-u.5	4327647	phospholipase D alpha 1-like
tae-r.2	123060546	phospholipase D alpha 1
tae-r.2	123040165	phospholipase D alpha 1
tae-r.2	123069109	phospholipase D alpha 1
hvu-r.1	123407044	phospholipase D alpha 2-like
hvu-r.1	123397410	phospholipase D alpha 1-like
hvu-r.1	123443052	phospholipase D alpha 1
bdi-r.1	100839982	phospholipase D alpha 2
bdi-r.1	100822640	phospholipase D alpha 1
bdi-r.1	100826235	phospholipase D alpha 1
ath-u.5	PLDALPHA1	phospholipase D alpha 1
ath-u.5	PLDALPHA2	phospholipase D alpha 2
gma-u.5	100794849	phospholipase D alpha 1
gma-u.5	100794115	phospholipase D alpha 1
gma-u.5	100791688	phospholipase D alpha 1
sly-u.5	PLDa2	phospholipase PLDa2
sly-u.5	101264185	phospholipase D alpha 1-like
sly-u.5	TPLD	phospholipase D alpha
bra-r.6	103869877	phospholipase D alpha 1
vvi-u.5	100257647	phospholipase D alpha 1
ppo-u.5	7475119	phospholipase D alpha 1
ppo-u.5	18096711	phospholipase D alpha 1
mtr-u.5	11435279	phospholipase D alpha 1
mtr-u.5	11436615	phospholipase D alpha 1
mtr-u.5	11426765	phospholipase D alpha 1
ghi-r.1	107937367	phospholipase D alpha 1
ghi-r.1	107944262	phospholipase D alpha 1
ghi-r.1	107953783	phospholipase D alpha 1
bna-r.1	106400840	phospholipase D alpha 1
bna-r.1	125575093	phospholipase D alpha 2-like
bna-r.1	125574832	phospholipase D alpha 1-like
sot-r.1	102588687	phospholipase D alpha 1
sot-r.1	102589221	phospholipase D alpha 1-like
sot-r.1	102591907	phospholipase D alpha 1-like
cit-r.1	102621799	phospholipase D alpha 1-like
cit-r.1	102578017	phospholipase D alpha
nta-r.1	107779964	phospholipase D alpha 1
nta-r.1	107779725	phospholipase D alpha 1
nta-r.1	107782014	phospholipase D alpha 1-like

Top 50 coexpressed genes to 542702 (zma-m.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 542702 (zma-m.5 coexpression data)

CoexMap"542702"

[Cytoscape]

Annotation

functional annotation

KEGG

zma00564 [list] [network] Glycerophospholipid metabolism (130 genes)

zma00565 [list] [network] Ether lipid metabolism (32 genes)

zma04144 [list] [network] Endocytosis (208 genes)

GO BP

GO:0009395 [list] [network] phospholipid catabolic process	(28 genes)	IEA
GO:0046470 [list] [network] phosphatidylcholine metabolic process	(28 genes)	IEA

GO CC

GO:0005886 [list] [network] plasma membrane

(793 genes)

IEA

GO MF

GO:0004630 [list] [network] phospholipase D activity	(20 genes)	IEA
GO:0005509 [list] [network] calcium ion binding	(329 genes)	IEA

Protein

NP_001105686.1 [sequence] [blastp]
XP_008673445.1 [sequence] [blastp]
XP_008673446.1 [sequence] [blastp]
XP_020405651.1 [sequence] [blastp]
XP_035821991.1 [sequence] [blastp]
XP_035821992.1 [sequence] [blastp]
XP_035821993.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, extr 2, cyto_pero 2, pero 1, cysk_plas 1, mito_plas 1	(predict for NP_001105686.1)
cyto 3, extr 2, cysk_plas 1, mito_plas 1, chlo 1, nucl 1, plas 1, vacu 1, E.R. 1, pero 1, E.R._vacu 1	(predict for XP_008673445.1)
cyto 3, extr 2, cysk_plas 1, mito_plas 1, chlo 1, nucl 1, plas 1, vacu 1, E.R. 1, pero 1, E.R._vacu 1	(predict for XP_008673446.1)
cyto 4, extr 2, cyto_pero 2, cyto_E.R. 2	(predict for XP_020405651.1)
cyto 3, extr 2, cysk_plas 1, mito_plas 1, chlo 1, nucl 1, plas 1, vacu 1, E.R. 1, pero 1, E.R._vacu 1	(predict for XP_035821991.1)
cyto 3, extr 2, cysk_plas 1, mito_plas 1, chlo 1, nucl 1, plas 1, vacu 1, E.R. 1, pero 1, E.R._vacu 1	(predict for XP_035821992.1)
cyto 4, extr 2, cyto_pero 2, cyto_E.R. 2	(predict for XP_035821993.1)

Subcellular
localization
TargetP

other 4, scret 3	(predict for NP_001105686.1)
other 4, scret 3	(predict for XP_008673445.1)
other 4, scret 3	(predict for XP_008673446.1)
other 4, scret 3	(predict for XP_020405651.1)
other 4, scret 3	(predict for XP_035821991.1)
other 4, scret 3	(predict for XP_035821992.1)
other 4, scret 3	(predict for XP_035821993.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-m.5 for 542702	zma-u.5 for 542702	zma-r.6 for 542702	zma-u.5 for 100280155	zma-u.5 for 100279815	zma-u.5 for 103630082	sbi-r.1 for 110433400	sbi-r.1 for 8065077	osa-u.5 for 4341469	osa-u.5 for 4337942	osa-u.5 for 4327647	tae-r.2 for 123060546	tae-r.2 for 123040165	tae-r.2 for 123069109	hvu-r.1 for 123407044	hvu-r.1 for 123397410	hvu-r.1 for 123443052	bdi-r.1 for 100839982	bdi-r.1 for 100822640	bdi-r.1 for 100826235	ath-u.5 for PLDALPHA1	ath-u.5 for PLDALPHA2	gma-u.5 for 100794849	gma-u.5 for 100794115	gma-u.5 for 100791688	sly-u.5 for PLDa2	sly-u.5 for 101264185	sly-u.5 for TPLD	bra-r.6 for 103869877	vvi-u.5 for 100257647	ppo-u.5 for 7475119	ppo-u.5 for 18096711	mtr-u.5 for 11435279	mtr-u.5 for 11436615	mtr-u.5 for 11426765	ghi-r.1 for 107937367	ghi-r.1 for 107944262	ghi-r.1 for 107953783	bna-r.1 for 106400840	bna-r.1 for 125575093	bna-r.1 for 125574832	sot-r.1 for 102588687	sot-r.1 for 102589221	sot-r.1 for 102591907	cit-r.1 for 102621799	cit-r.1 for 102578017	nta-r.1 for 107779964	nta-r.1 for 107779725	nta-r.1 for 107782014

Ortholog

Ortholog ID: 1270

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

TPLD

PLDa1

PLD

Function^*

phospholipase D family protein

phospholipase D alpha 1

phospholipase D alpha 2

phospholipase D alpha 1

phospholipase D alpha 2-like

phospholipase D alpha 1-like

phospholipase D alpha 1

phospholipase D alpha 2

phospholipase D alpha 2-like

phospholipase D alpha 1-like

phospholipase D alpha 1

phospholipase D alpha 2

phospholipase D alpha 1

phospholipase D alpha 2

phospholipase D alpha 1

phospholipase D alpha 1-like

phospholipase D alpha

phospholipase PLDa1

phospholipase D alpha 2

phospholipase D alpha 1

phospholipase D alpha

phospholipase D alpha 1

phospholipase D alpha 2-like

phospholipase D alpha 2

phospholipase D alpha 1

phospholipase D alpha 1-like

phospholipase D alpha 1

phospholipase D alpha 1-like

phospholipase D alpha

phospholipase D alpha 1-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	3
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma01250	Biosynthesis of nucleotide sugars	2
zma01230	Biosynthesis of amino acids	2
zma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	4
zma04517	IgSF CAM signaling	4
zma04814	Motor proteins	4
zma00564	Glycerophospholipid metabolism	2
zma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	7
sbi04144	Endocytosis	6
sbi03040	Spliceosome	5
sbi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00564	Glycerophospholipid metabolism	4
sbi00562	Inositol phosphate metabolism	2
sbi00565	Ether lipid metabolism	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00564	Glycerophospholipid metabolism	3
osa00565	Ether lipid metabolism	3
osa04144	Endocytosis	3
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	4
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3
tae00620	Pyruvate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00564	Glycerophospholipid metabolism	3
bdi04144	Endocytosis	3
bdi00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2
ath03050	Proteasome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	2
gma00565	Ether lipid metabolism	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	2
gma00565	Ether lipid metabolism	2
gma04144	Endocytosis	2
gma00500	Starch and sucrose metabolism	2
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	3
gma00565	Ether lipid metabolism	3
gma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00592	alpha-Linolenic acid metabolism	2
bra04144	Endocytosis	2
bra00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00562	Inositol phosphate metabolism	2
vvi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00564	Glycerophospholipid metabolism	5
mtr00565	Ether lipid metabolism	5
mtr04144	Endocytosis	3
mtr00592	alpha-Linolenic acid metabolism	3
mtr00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00051	Fructose and mannose metabolism	2
mtr00564	Glycerophospholipid metabolism	2
mtr00565	Ether lipid metabolism	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5
ghi00564	Glycerophospholipid metabolism	4
ghi00565	Ether lipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5
ghi00564	Glycerophospholipid metabolism	4
ghi00565	Ether lipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi00565	Ether lipid metabolism	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	5
bna00565	Ether lipid metabolism	5
bna04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	5
bna00565	Ether lipid metabolism	5
bna04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	5
bna00565	Ether lipid metabolism	5
bna04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3
sot00564	Glycerophospholipid metabolism	2
sot00565	Ether lipid metabolism	2
sot04144	Endocytosis	2
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	2
sot00565	Ether lipid metabolism	2
sot04144	Endocytosis	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	7
sot04070	Phosphatidylinositol signaling system	7
sot04075	Plant hormone signal transduction	7
sot04626	Plant-pathogen interaction	7
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	6
nta00565	Ether lipid metabolism	4
nta04144	Endocytosis	4
nta00561	Glycerolipid metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	6
nta00565	Ether lipid metabolism	4
nta04144	Endocytosis	4
nta00561	Glycerolipid metabolism	2
nta04070	Phosphatidylinositol signaling system	2

Expression

Expression pattern

Entrez Gene ID^*

100280155

100279815

103630082

8065077

8071513

4341469

4337942

4327647

123060546

123180668

123163188

123407044

123397410

123443052

100839982

100822640

100826235

820816

841689

100794115

100791688

100784434

101264185

101257989

543819

103840526

100257647

100232987

18096711

11435279

11436615

11426765

107937367

107944262

107918952

106400840

125609497

106387492

102588687

102589221

102597936

102621799

102578017

107788090

107823175

107772442

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	2	3	3	3	3	2	3	3	1	1	2	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 542702 (zma-m.5 coexpression data)

Top 50 enrichment test to 542702 (zma-m.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**