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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   R-S   seed color component at R1 
 zma-u.5   R-S   seed color component at R1 
 zma-u.5   103646088   uncharacterized LOC103646088 
 sbi-r.1   8056590   anthocyanin regulatory R-S protein 
 osa-u.5   4323849   anthocyanin regulatory R-S protein 
 tae-r.2   123098945   anthocyanin regulatory R-S protein-like 
 ath-u.5   GL3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   EGL3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100808167   transcription factor EGL1 
 gma-u.5   100798122   transcription factor EGL1 
 gma-u.5   100795524   transcription factor EGL1 
 sly-u.5   JAF13   bHLH-type transcription factor JAF13 
 bra-r.6   103864070   transcription factor GLABRA 3 
 bra-r.6   EGL3   transcription factor EGL1 
 bra-r.6   103838089   transcription factor EGL1 
 vvi-u.5   MYCA1   myc anthocyanin regulatory protein 
 vvi-u.5   100258234   transcription factor EGL1 
 ppo-u.5   7461769   transcription factor EGL1 
 ppo-u.5   7465866   transcription factor EGL1 
 ppo-u.5   7479311   transcription factor GLABRA 3 
 mtr-u.5   25502049   transcription factor EGL1 
 ghi-r.1   107904486   transcription factor EGL1-like 
 ghi-r.1   107911518   transcription factor GLABRA 3 
 ghi-r.1   107936704   transcription factor EGL1-like 
 bna-r.1   106366513   transcription factor EGL1 
 bna-r.1   106390918   transcription factor EGL1-like 
 bna-r.1   106392188   transcription factor EGL1 
 sot-r.1   JAF13   transcription factor GLABRA 3-like 
 cit-r.1   102606766   transcription factor GLABRA 3-like 
 cit-r.1   102624378   transcription factor EGL1 
 cit-r.1   127901489   transcription factor EGL1-like 
 nta-r.1   107764381   transcription factor EGL1-like 
 nta-r.1   107826976   transcription factor EGL1-like 

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Top 50 coexpressed genes to R-S (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to R-S (zma-r.6 coexpression data)

CoexMap"100126972"


zmaR-S | Entrez gene ID : 100126972      
Species zma sbi osa tae ath gma sly bra vvi ppo mtr ghi bna sot cit nta bdi cre hvu
Paralog 3 1 1 1 2 3 1 3 2 3 1 3 3 1 3 2 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
Protein NP_001105339.2 [sequence] [blastp]
NP_001106073.2 [sequence] [blastp]
XP_008661283.1 [sequence] [blastp]
XP_008661285.1 [sequence] [blastp]
XP_008661286.1 [sequence] [blastp]
XP_008661287.1 [sequence] [blastp]
XP_008661288.1 [sequence] [blastp]
XP_035818751.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for NP_001105339.2)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for NP_001106073.2)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661283.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661285.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661286.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661287.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661288.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_035818751.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_001105339.2)
mito 6  (predict for NP_001106073.2)
mito 6  (predict for XP_008661283.1)
mito 6  (predict for XP_008661285.1)
mito 6  (predict for XP_008661286.1)
mito 6  (predict for XP_008661287.1)
mito 6  (predict for XP_008661288.1)
mito 6  (predict for XP_035818751.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
R-S
zma-u.5
for
R-S
zma-u.5
for
103646088
sbi-r.1
for
8056590
osa-u.5
for
4323849
tae-r.2
for
123098945
ath-u.5
for
GL3
ath-u.5
for
EGL3
gma-u.5
for
100808167
gma-u.5
for
100798122
gma-u.5
for
100795524
sly-u.5
for
JAF13
bra-r.6
for
103864070
bra-r.6
for
EGL3
bra-r.6
for
103838089
vvi-u.5
for
MYCA1
vvi-u.5
for
100258234
ppo-u.5
for
7461769
ppo-u.5
for
7465866
ppo-u.5
for
7479311
mtr-u.5
for
25502049
ghi-r.1
for
107904486
ghi-r.1
for
107911518
ghi-r.1
for
107936704
bna-r.1
for
106366513
bna-r.1
for
106390918
bna-r.1
for
106392188
sot-r.1
for
JAF13
cit-r.1
for
102606766
cit-r.1
for
102624378
cit-r.1
for
127901489
nta-r.1
for
107764381
nta-r.1
for
107826976


Ortholog ID: 2357
Species zma zma sbi osa ath ath gma gma gma sly bra bra bra vvi vvi ppo ppo ppo mtr ghi ghi ghi bna bna bna sot cit cit cit nta nta
Symbol R-S LOC103646088 LOC8056590 LOC4323849 GL3 EGL3 LOC100798122 LOC100795524 LOC100783746 JAF13 LOC103864070 EGL3 LOC103838089 MYCA1 LOC100258234 LOC7461769 LOC7465866 LOC7479311 LOC25502049 LOC107911518 LOC107922841 LOC107922777 LOC106366513 LOC106392188 LOC106424835 JAF13 LOC102606766 LOC102624378 LOC127901489 LOC107764381 LOC107826976
Function* seed color component at R1 uncharacterized LOC103646088 anthocyanin regulatory R-S protein anthocyanin regulatory R-S protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 bHLH-type transcription factor JAF13 transcription factor GLABRA 3 transcription factor EGL1 transcription factor EGL1 myc anthocyanin regulatory protein transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 transcription factor GLABRA 3 transcription factor EGL1 transcription factor GLABRA 3 transcription factor GLABRA 3 transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 transcription factor GLABRA 3-like transcription factor GLABRA 3-like transcription factor EGL1 transcription factor EGL1-like transcription factor EGL1-like transcription factor EGL1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00941 Flavonoid biosynthesis 7
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 5
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00330 Arginine and proline metabolism 2
ppo00360 Phenylalanine metabolism 2
ppo00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr04075 Plant hormone signal transduction 3
mtr04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100126972 103646088 8056590 4323849 834133 842669 100798122 100795524 100783746 101256795 103864070 103838261 103838089 100233025 100258234 7461769 7465866 7479311 25502049 107911518 107922841 107922777 106366513 106392188 106424835 102597504 102606766 102624378 127901489 107764381 107826976
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