ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-r.6	100280237	uncharacterized LOC100280237
zma-u.5	100280237	uncharacterized LOC100280237
zma-m.5	100280237	uncharacterized LOC100280237
zma-u.5	103627215	ribonuclease TUDOR 1
sbi-r.1	8056813	ribonuclease TUDOR 1
osa-u.5	4329508	ribonuclease TUDOR 1
tae-r.2	123087230	ribonuclease TUDOR 1
tae-r.2	123090730	ribonuclease TUDOR 1
tae-r.2	123095741	ribonuclease TUDOR 1
hvu-r.1	123447219	ribonuclease TUDOR 1-like
bdi-r.1	100843582	ribonuclease TUDOR 1
bdi-r.1	100832402	ribonuclease TUDOR 1
ath-u.5	Tudor1	TUDOR-SN protein 1
ath-u.5	Tudor2	TUDOR-SN protein 2
gma-u.5	100802766	ribonuclease TUDOR 1
gma-u.5	100809534	ribonuclease TUDOR 1
gma-u.5	100794481	ribonuclease TUDOR 1
sly-u.5	101247006	ribonuclease TUDOR 1
sly-u.5	101247307	ribonuclease TUDOR 1
bra-r.6	103850652	ribonuclease TUDOR 1
bra-r.6	103854960	ribonuclease TUDOR 2
bra-r.6	103855724	ribonuclease TUDOR 1
vvi-u.5	100244222	ribonuclease TUDOR 1
vvi-u.5	100256648	ribonuclease TUDOR 1
ppo-u.5	7484904	ribonuclease TUDOR 1
ppo-u.5	7456667	ribonuclease TUDOR 1
mtr-u.5	11434089	ribonuclease TUDOR 1
ghi-r.1	107912058	ribonuclease TUDOR 1
ghi-r.1	107923961	ribonuclease TUDOR 1
ghi-r.1	107949621	ribonuclease TUDOR 1
bna-r.1	125581579	ribonuclease TUDOR 2-like
bna-r.1	106431709	ribonuclease TUDOR 2-like
bna-r.1	106429355	ribonuclease TUDOR 1
sot-r.1	102600425	staphylococcal nuclease domain-containing protein 1-like
cit-r.1	102617109	ribonuclease TUDOR 1
nta-r.1	107762347	ribonuclease TUDOR 1
nta-r.1	107769187	ribonuclease TUDOR 1
nta-r.1	107815454	ribonuclease TUDOR 1
cre-r.1	CHLRE_11g477850v5	uncharacterized protein

Top 50 coexpressed genes to 100280237 (zma-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100280237 (zma-r.6 coexpression data)

CoexMap"100280237"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing	(47 genes)	IEA
GO:0006402 [list] [network] mRNA catabolic process	(104 genes)	IEA

GO CC

GO:0031332 [list] [network] RNAi effector complex	(2 genes)	IEA
GO:0005829 [list] [network] cytosol	(983 genes)	IEA
GO:0005634 [list] [network] nucleus	(3371 genes)	IEA

GO MF

GO:0004518 [list] [network] nuclease activity	(195 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1549 genes)	IEA

Protein

NP_001313298.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 2, cyto 2, cyto_nucl 2

(predict for NP_001313298.1)

Subcellular
localization
TargetP

other 4

(predict for NP_001313298.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-r.6 for 100280237	zma-u.5 for 100280237	zma-m.5 for 100280237	zma-u.5 for 103627215	sbi-r.1 for 8056813	osa-u.5 for 4329508	tae-r.2 for 123087230	tae-r.2 for 123090730	tae-r.2 for 123095741	hvu-r.1 for 123447219	bdi-r.1 for 100843582	bdi-r.1 for 100832402	ath-u.5 for Tudor1	ath-u.5 for Tudor2	gma-u.5 for 100802766	gma-u.5 for 100809534	gma-u.5 for 100794481	sly-u.5 for 101247006	sly-u.5 for 101247307	bra-r.6 for 103850652	bra-r.6 for 103854960	bra-r.6 for 103855724	vvi-u.5 for 100244222	vvi-u.5 for 100256648	ppo-u.5 for 7484904	ppo-u.5 for 7456667	mtr-u.5 for 11434089	ghi-r.1 for 107912058	ghi-r.1 for 107923961	ghi-r.1 for 107949621	bna-r.1 for 125581579	bna-r.1 for 106431709	bna-r.1 for 106429355	sot-r.1 for 102600425	cit-r.1 for 102617109	nta-r.1 for 107762347	nta-r.1 for 107769187	nta-r.1 for 107815454	cre-r.1 for CHLRE_11g477850v5

Ortholog

Ortholog ID: 3257

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Tudor1

Tudor2

Function^*

uncharacterized LOC100280237

ribonuclease TUDOR 1

ribonuclease TUDOR 1-like

ribonuclease TUDOR 1

TUDOR-SN protein 1

TUDOR-SN protein 2

ribonuclease TUDOR 1

ribonuclease TUDOR 2

ribonuclease TUDOR 1

ribonuclease TUDOR 2-like

ribonuclease TUDOR 2

ribonuclease TUDOR 1

staphylococcal nuclease domain-containing protein 1-like

ribonuclease TUDOR 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma03060	Protein export	4
zma01200	Carbon metabolism	2
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	8
zma03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4
osa03060	Protein export	3
osa04145	Phagosome	2
osa04144	Endocytosis	2
osa05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	7
tae03060	Protein export	4
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	4
tae04141	Protein processing in endoplasmic reticulum	4
tae03015	mRNA surveillance pathway	3
tae00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	5
tae03060	Protein export	4
tae00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04142	Lysosome	2
hvu05100	Bacterial invasion of epithelial cells	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	7
bdi03060	Protein export	4
bdi04142	Lysosome	3
bdi04145	Phagosome	3
bdi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	6
bdi03060	Protein export	4
bdi00510	N-Glycan biosynthesis	3
bdi00513	Various types of N-glycan biosynthesis	3
bdi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	2
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	12
sly04145	Phagosome	3
sly03060	Protein export	3
sly00020	Citrate cycle (TCA cycle)	2
sly00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	6
sly03040	Spliceosome	3
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	3
bra01200	Carbon metabolism	2
bra00230	Purine metabolism	2
bra01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	3
vvi00600	Sphingolipid metabolism	2
vvi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr04141	Protein processing in endoplasmic reticulum	3
mtr04144	Endocytosis	2
mtr05100	Bacterial invasion of epithelial cells	2
mtr00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	2
sot00020	Citrate cycle (TCA cycle)	2
sot00785	Lipoic acid metabolism	2
sot01200	Carbon metabolism	2
sot01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	4
nta00860	Porphyrin metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	4
nta00860	Porphyrin metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	5
cre03060	Protein export	3
cre04145	Phagosome	3

Expression

Expression pattern

Entrez Gene ID^*

100280237

103627215

8056813

4329508

123087230

123090730

123095741

123447219

100843582

100832402

830626

836300

100809534

100794481

100782692

101247006

101247307

103850652

103854960

103855724

100244222

100256648

7484904

7456667

11434089

107912058

107949621

107886182

125581579

106382749

106383395

102600425

102617109

107769187

107815454

107822682

5722882

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Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	1	1	3	1	2	2	3	2	3	2	2	1	3	3	1	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100280237 (zma-r.6 coexpression data)

Top 50 enrichment test to 100280237 (zma-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**