ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-r.6	100286366	AGG2
zma-u.5	100286366	AGG2
zma-m.5	100286366	AGG2
zma-u.5	100191839	uncharacterized LOC100191839
sbi-r.1	8062241	guanine nucleotide-binding protein subunit gamma 1
sbi-r.1	8069946	guanine nucleotide-binding protein subunit gamma 2
osa-u.5	107278176	guanine nucleotide-binding protein subunit gamma 2-like
osa-u.5	4333518	guanine nucleotide-binding protein subunit gamma 1-like
tae-r.2	123132167	guanine nucleotide-binding protein subunit gamma 2
hvu-r.1	123452141	guanine nucleotide-binding protein subunit gamma 1
hvu-r.1	123404235	guanine nucleotide-binding protein subunit gamma 2-like
bdi-r.1	100830673	guanine nucleotide-binding protein subunit gamma 1
ath-u.5	GG1	Ggamma-subunit 1
ath-u.5	AGG2	G-protein gamma subunit 2
gma-u.5	AMT4.5	ammonium transporter AMT4.5
gma-u.5	100798973	guanine nucleotide-binding protein subunit gamma 2
gma-u.5	100812916	guanine nucleotide-binding protein subunit gamma 2
sly-u.5	101259726	guanine nucleotide-binding protein subunit gamma 2
sly-u.5	101260574	guanine nucleotide-binding protein subunit gamma 1
bra-r.6	103834171	guanine nucleotide-binding protein subunit gamma 2
bra-r.6	103859985	guanine nucleotide-binding protein subunit gamma 2
vvi-u.5	100256197	guanine nucleotide-binding protein subunit gamma 1
vvi-u.5	100245781	guanine nucleotide-binding protein subunit gamma 2
ppo-u.5	7469163	guanine nucleotide-binding protein subunit gamma 2
ppo-u.5	7476870	guanine nucleotide-binding protein subunit gamma 1
mtr-u.5	11433274	guanine nucleotide-binding protein subunit gamma 2
mtr-u.5	25484477	guanine nucleotide-binding protein subunit gamma 2
mtr-u.5	25484482	guanine nucleotide-binding protein subunit gamma 2
ghi-r.1	107908304	guanine nucleotide-binding protein subunit gamma 2
ghi-r.1	107929154	guanine nucleotide-binding protein subunit gamma 2
ghi-r.1	107928577	guanine nucleotide-binding protein subunit gamma 2
bna-r.1	106415923	guanine nucleotide-binding protein subunit gamma 1
bna-r.1	106416661	guanine nucleotide-binding protein subunit gamma 2
bna-r.1	106444151	guanine nucleotide-binding protein subunit gamma 2
sot-r.1	102583852	guanine nucleotide-binding protein subunit gamma 2-like
sot-r.1	102581265	guanine nucleotide-binding protein subunit gamma 1
sot-r.1	102586116	uncharacterized LOC102586116
cit-r.1	112498271	guanine nucleotide-binding protein subunit gamma 1
cit-r.1	102631001	guanine nucleotide-binding protein subunit gamma 1
nta-r.1	107761193	guanine nucleotide-binding protein subunit gamma 2
nta-r.1	107766504	guanine nucleotide-binding protein subunit gamma 1
nta-r.1	107777545	guanine nucleotide-binding protein subunit gamma 1-like

Top 50 coexpressed genes to 100286366 (zma-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100286366 (zma-r.6 coexpression data)

CoexMap"100286366"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0007186 [list] [network] G protein-coupled receptor signaling pathway

(21 genes)

IEA

GO CC

GO MF

Protein

NP_001152725.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, nucl 2, chlo 1

(predict for NP_001152725.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001152725.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-r.6 for 100286366	zma-u.5 for 100286366	zma-m.5 for 100286366	zma-u.5 for 100191839	sbi-r.1 for 8062241	sbi-r.1 for 8069946	osa-u.5 for 107278176	osa-u.5 for 4333518	tae-r.2 for 123132167	hvu-r.1 for 123452141	hvu-r.1 for 123404235	bdi-r.1 for 100830673	ath-u.5 for GG1	ath-u.5 for AGG2	gma-u.5 for AMT4.5	gma-u.5 for 100798973	gma-u.5 for 100812916	sly-u.5 for 101259726	sly-u.5 for 101260574	bra-r.6 for 103834171	bra-r.6 for 103859985	vvi-u.5 for 100256197	vvi-u.5 for 100245781	ppo-u.5 for 7469163	ppo-u.5 for 7476870	mtr-u.5 for 11433274	mtr-u.5 for 25484477	mtr-u.5 for 25484482	ghi-r.1 for 107908304	ghi-r.1 for 107929154	ghi-r.1 for 107928577	bna-r.1 for 106415923	bna-r.1 for 106416661	bna-r.1 for 106444151	sot-r.1 for 102583852	sot-r.1 for 102581265	sot-r.1 for 102586116	cit-r.1 for 112498271	cit-r.1 for 102631001	nta-r.1 for 107761193	nta-r.1 for 107766504	nta-r.1 for 107777545

Ortholog

Ortholog ID: 2162

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

GG1

AGG2

AMT4.5

Function^*

AGG2

uncharacterized LOC100191839

guanine nucleotide-binding protein subunit gamma 1

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 2-like

guanine nucleotide-binding protein subunit gamma 1-like

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 1

guanine nucleotide-binding protein subunit gamma 2-like

guanine nucleotide-binding protein subunit gamma 1

Ggamma-subunit 1

G-protein gamma subunit 2

ammonium transporter AMT4.5

guanine nucleotide-binding protein subunit gamma 2

uncharacterized LOC100527128

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 1

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 1

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 1

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 1

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 2-like

guanine nucleotide-binding protein subunit gamma 1

uncharacterized LOC102586116

guanine nucleotide-binding protein subunit gamma 1

guanine nucleotide-binding protein subunit gamma 2

guanine nucleotide-binding protein subunit gamma 1-like

guanine nucleotide-binding protein subunit gamma 2-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	2
tae00900	Terpenoid backbone biosynthesis	2
tae00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	2
tae00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	3
ath00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
gma00940	Phenylpropanoid biosynthesis	3
gma04016	MAPK signaling pathway - plant	3
gma04075	Plant hormone signal transduction	3
gma00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00710	Carbon fixation by Calvin cycle	2
sly01200	Carbon metabolism	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	5
bra00030	Pentose phosphate pathway	3
bra00480	Glutathione metabolism	3
bra00620	Pyruvate metabolism	2
bra00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	4
bra00030	Pentose phosphate pathway	3
bra00910	Nitrogen metabolism	2
bra01310	Nitrogen cycle	2
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00941	Flavonoid biosynthesis	4
ppo00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr00940	Phenylpropanoid biosynthesis	2
mtr03040	Spliceosome	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	5
ghi00460	Cyanoamino acid metabolism	3
ghi00920	Sulfur metabolism	3
ghi01200	Carbon metabolism	3
ghi01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	3
ghi03083	Polycomb repressive complex	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	8
bna00030	Pentose phosphate pathway	6
bna00480	Glutathione metabolism	6
bna00230	Purine metabolism	2
bna00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	9
bna00030	Pentose phosphate pathway	8
bna00480	Glutathione metabolism	8
bna00860	Porphyrin metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00030	Pentose phosphate pathway	2
sot00051	Fructose and mannose metabolism	2
sot00052	Galactose metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	3
sot00190	Oxidative phosphorylation	2
sot04142	Lysosome	2
sot04144	Endocytosis	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta00999	Biosynthesis of various plant secondary metabolites	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04517	IgSF CAM signaling	2
nta05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04820	Cytoskeleton in muscle cells	2
nta04144	Endocytosis	2
nta04517	IgSF CAM signaling	2
nta05100	Bacterial invasion of epithelial cells	2
nta00190	Oxidative phosphorylation	2

Expression

Expression pattern

Entrez Gene ID^*

100286366

100191839

8062241

8069946

107278176

4333518

123132167

123143699

123452141

123404235

100830673

825517

825532

100783448

100779336

100527128

101259726

101260574

103834171

103859985

100256197

100245781

7469163

7476870

11433274

25484477

25484482

107928577

107924251

107902519

106415923

106416661

106444151

102583852

102581265

102586116

112498271

102631001

107761193

107777545

107800581

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Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	1	2	1	2	3	2	2	2	2	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100286366 (zma-r.6 coexpression data)

Top 50 enrichment test to 100286366 (zma-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**