ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-r.6	100382225	uncharacterized LOC100382225
zma-u.5	100382225	uncharacterized LOC100382225
zma-m.5	100382225	uncharacterized LOC100382225
sbi-r.1	8084819	uncharacterized LOC8084819
osa-u.5	4325321	uncharacterized LOC4325321
tae-r.2	123065436	uncharacterized LOC123065436
tae-r.2	123058368	uncharacterized LOC123058368
tae-r.2	123074532	uncharacterized LOC123074532
hvu-r.1	123395194	uncharacterized LOC123395194
ath-u.5	AT1G75125	plastid transcriptionally active protein
gma-u.5	100777454	uncharacterized LOC100777454
gma-u.5	100776471	uncharacterized LOC100776471
vvi-u.5	100261115	uncharacterized LOC100261115
ppo-u.5	7497833	uncharacterized LOC7497833
mtr-u.5	11443242	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic
ghi-r.1	107907262	uncharacterized LOC107907262
ghi-r.1	107907446	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic
sot-r.1	102592817	uncharacterized LOC102592817
cit-r.1	102616198	hypothetical protein
nta-r.1	107784822	uncharacterized LOC107784822
cre-r.1	CHLRE_12g558850v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_001143460.1 [sequence] [blastp]
NP_001168452.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 3	(predict for NP_001143460.1)
chlo 10	(predict for NP_001168452.1)

Subcellular
localization
TargetP

mito 8	(predict for NP_001143460.1)
mito 8, other 3	(predict for NP_001168452.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-r.6 for 100382225	zma-u.5 for 100382225	zma-m.5 for 100382225	sbi-r.1 for 8084819	osa-u.5 for 4325321	tae-r.2 for 123065436	tae-r.2 for 123058368	tae-r.2 for 123074532	hvu-r.1 for 123395194	ath-u.5 for AT1G75125	gma-u.5 for 100777454	gma-u.5 for 100776471	vvi-u.5 for 100261115	ppo-u.5 for 7497833	mtr-u.5 for 11443242	ghi-r.1 for 107907262	ghi-r.1 for 107907446	sot-r.1 for 102592817	cit-r.1 for 102616198	nta-r.1 for 107784822	cre-r.1 for CHLRE_12g558850v5

Ortholog

Ortholog ID: 11549

Species

zma

sbi

osa

tae

hvu

ath

gma

vvi

ppo

mtr

ghi

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100382225

uncharacterized LOC8084819

uncharacterized LOC4325321

uncharacterized LOC123065436

uncharacterized LOC123058368

uncharacterized LOC123074532

uncharacterized LOC123395194

plastid transcriptionally active protein

uncharacterized LOC100777454

uncharacterized LOC100776471

uncharacterized LOC100261115

uncharacterized LOC7497833

protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic

uncharacterized LOC107907262

protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic

uncharacterized LOC102592817

hypothetical protein

uncharacterized LOC107784822

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03020	RNA polymerase	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03020	RNA polymerase	2
osa03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	4
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

100382225

8084819

4325321

123065436

123058368

123074532

123395194

28717426

100777454

100776471

100261115

7497833

11443242

107907262

107907446

102592817

102616198

107784822

5728362

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100382225 (zma-r.6 coexpression data)

Top 50 enrichment test to 100382225 (zma-r.6 coexpression data)


Species	zma	sbi	osa	tae	hvu	ath	gma	vvi	ppo	mtr	ghi	sot	cit	nta	cre	bna	bra	sly	bdi
Paralog	3	1	1	3	1	1	2	1	1	1	2	1	1	1	1	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100382225 (zma-r.6 coexpression data)

Top 50 enrichment test to 100382225 (zma-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**