ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-r.6	100382582	histone one (H1)
zma-u.5	100382582	histone one (H1)
zma-m.5	100382582	histone one (H1)
zma-u.5	541964	histone H1-like protein
zma-u.5	103625810	histone H1-like
zma-u.5	541973	histone one (H1) 101
sbi-r.1	8057614	histone H1
sbi-r.1	8056631	histone H1
sbi-r.1	8081244	histone H1
osa-u.5	4334439	histone H1
osa-u.5	4342583	histone H1
osa-u.5	4335314	histone H1
tae-r.2	123123238	histone H1-like
tae-r.2	606312	histone H1-like
tae-r.2	606310	histone H1-like
hvu-r.1	123452741	histone H1-like
hvu-r.1	123452742	histone H1
hvu-r.1	123427445	histone H1-like
bdi-r.1	100829326	histone H1
bdi-r.1	100833820	histone H1
bdi-r.1	100834570	histone H1
ath-u.5	HIS1-3	histone H1-3
ath-u.5	AT1G06760	winged-helix DNA-binding transcription factor family protein
ath-u.5	AT2G30620	winged-helix DNA-binding transcription factor family protein
gma-u.5	100795994	histone H1
gma-u.5	100785055	histone H1
gma-u.5	100306187	H1/H5 domain-containing protein
sly-u.5	101245495	histone H1-like
sly-u.5	101248710	histone H1-like
sly-u.5	544142	H1 histone-like protein
bra-r.6	103837838	histone H1
bra-r.6	103857332	histone H1.2
bra-r.6	103865059	histone H1.2
vvi-u.5	100259836	histone H1
vvi-u.5	100254064	histone H1
vvi-u.5	100251147	histone H1
ppo-u.5	7474614	histone H1-like
ppo-u.5	7460433	histone H1
ppo-u.5	7479991	histone H1.2
mtr-u.5	25484336	histone H1
mtr-u.5	25499208	histone H1
mtr-u.5	25484627	histone H1
ghi-r.1	107912798	histone H1
ghi-r.1	107913009	histone H1
ghi-r.1	107912347	histone H1
bna-r.1	106415530	histone H1.2
bna-r.1	106399610	histone H1.1-like
bna-r.1	106406187	histone H1.2-like
sot-r.1	102583906	histone H1
sot-r.1	102589354	histone H1-like
cit-r.1	102612106	histone H1
cit-r.1	102618662	histone H1-like
cit-r.1	102626409	histone H1
nta-r.1	107830754	histone H1-like
nta-r.1	107785532	histone H1.2
nta-r.1	107784565	uncharacterized LOC107784565
cre-r.1	CHLRE_06g275900v5	uncharacterized protein
cre-r.1	CHLRE_13g567450v5	uncharacterized protein

Top 50 coexpressed genes to 100382582 (zma-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100382582 (zma-r.6 coexpression data)

CoexMap"100382582"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045910 [list] [network] negative regulation of DNA recombination	(18 genes)	IEA
GO:0030261 [list] [network] chromosome condensation	(24 genes)	IEA
GO:0006334 [list] [network] nucleosome assembly	(36 genes)	IEA

GO CC

GO:0000786 [list] [network] nucleosome	(103 genes)	IEA
GO:0005634 [list] [network] nucleus	(3371 genes)	IEA

GO MF

GO:0031492 [list] [network] nucleosomal DNA binding	(14 genes)	IEA
GO:0030527 [list] [network] structural constituent of chromatin	(90 genes)	IEA
GO:0003690 [list] [network] double-stranded DNA binding	(580 genes)	IEA

Protein

NP_001281234.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1

(predict for NP_001281234.2)

Subcellular
localization
TargetP

other 7, chlo 5

(predict for NP_001281234.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-r.6 for 100382582	zma-u.5 for 100382582	zma-m.5 for 100382582	zma-u.5 for 541964	zma-u.5 for 103625810	zma-u.5 for 541973	sbi-r.1 for 8057614	sbi-r.1 for 8056631	sbi-r.1 for 8081244	osa-u.5 for 4334439	osa-u.5 for 4342583	osa-u.5 for 4335314	tae-r.2 for 123123238	tae-r.2 for 606312	tae-r.2 for 606310	hvu-r.1 for 123452741	hvu-r.1 for 123452742	hvu-r.1 for 123427445	bdi-r.1 for 100829326	bdi-r.1 for 100833820	bdi-r.1 for 100834570	ath-u.5 for HIS1-3	ath-u.5 for AT1G06760	ath-u.5 for AT2G30620	gma-u.5 for 100795994	gma-u.5 for 100785055	gma-u.5 for 100306187	sly-u.5 for 101245495	sly-u.5 for 101248710	sly-u.5 for 544142	bra-r.6 for 103837838	bra-r.6 for 103857332	bra-r.6 for 103865059	vvi-u.5 for 100259836	vvi-u.5 for 100254064	vvi-u.5 for 100251147	ppo-u.5 for 7474614	ppo-u.5 for 7460433	ppo-u.5 for 7479991	mtr-u.5 for 25484336	mtr-u.5 for 25499208	mtr-u.5 for 25484627	ghi-r.1 for 107912798	ghi-r.1 for 107913009	ghi-r.1 for 107912347	bna-r.1 for 106415530	bna-r.1 for 106399610	bna-r.1 for 106406187	sot-r.1 for 102583906	sot-r.1 for 102589354	cit-r.1 for 102612106	cit-r.1 for 102618662	cit-r.1 for 102626409	nta-r.1 for 107830754	nta-r.1 for 107785532	nta-r.1 for 107784565	cre-r.1 for CHLRE_06g275900v5	cre-r.1 for CHLRE_13g567450v5

Ortholog

Ortholog ID: 718

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

HIS1-3

Function^*

histone H1-like protein

histone H1-like

histone one (H1) 101

histone H1

histone H1-like

histone H1

histone H1-like

histone H1

histone H1-3

winged-helix DNA-binding transcription factor family protein

H1/H5 domain-containing protein

histone H1

histone H1-like

H1 histone-like protein

histone H1

histone H1.2

histone H1

histone H1.2-like

histone H1.2

histone H1

histone H1-like

histone H1

histone H1-like

histone H1

histone H1.2

uncharacterized LOC107766305

histone H1-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	2
zma00670	One carbon pool by folate	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

541964

103625810

541973

8057614

8056631

8081244

4334439

4342583

4335314

123054118

123054116

123123232

123452741

123452742

123452756

100829326

100833820

100834570

816317

837187

817612

100306187

100797229

100775944

101245495

544142

778281

103837838

103857332

103867940

100254064

100251147

100247613

7460433

18101583

18099218

25484335

25484327

107913009

107924311

107894274

106406187

106348386

106426396

102583906

102591139

102586395

102612106

102618662

102626409

107785532

107766305

107808821

5721745

5719074

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	3	3	3	3	3	3	3	3	3	3	3	3	2	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100382582 (zma-r.6 coexpression data)

Top 50 enrichment test to 100382582 (zma-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**