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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   109943118   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 zma-u.5   109943118   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 zma-u.5   542368   glyceraldehyde-3-phosphate dehydrogenase 1 
 zma-u.5   103642790   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 zma-u.5   103641723   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 osa-u.5   4336044   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 osa-u.5   4331495   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 ath-u.5   GAPB   glyceraldehyde-3-phosphate dehydrogenase B subunit 
 ath-u.5   GAPA-2   glyceraldehyde 3-phosphate dehydrogenase A subunit 2 
 ath-u.5   GAPA   glyceraldehyde 3-phosphate dehydrogenase A subunit 
 gma-u.5   100815649   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 gma-u.5   732655   glyceraldehyde-3-phosphate dehydrogenase A subunit 
 gma-u.5   732571   glyceraldehyde-3-phosphate dehydrogenase B subunit 
 sly-u.5   101266713   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 sly-u.5   101264004   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 sly-u.5   101253541   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like 
 vvi-u.5   100246378   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 vvi-u.5   100259814   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 ppo-u.5   7494712   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 ppo-u.5   7457998   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 mtr-u.5   11428156   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 mtr-u.5   11437530   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 

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Top 50 coexpressed genes to 109943118 (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 109943118 (zma-r.6 coexpression data)

CoexMap"109943118"


zmaLOC109943118 | Entrez gene ID : 109943118    
Species zma osa ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 2 3 3 3 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00710 [list] [network] Carbon fixation by Calvin cycle (108 genes)
zma01200 [list] [network] Carbon metabolism (344 genes)
GO BP
GO:0006006 [list] [network] glucose metabolic process  (62 genes)  IEA  
GO CC
GO MF
GO:0016620 [list] [network] oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor  (61 genes)  IEA  
GO:0050661 [list] [network] NADP binding  (85 genes)  IEA  
GO:0051287 [list] [network] NAD binding  (112 genes)  IEA  
Protein XP_020401536.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  pero 1,  cysk 1  (predict for XP_020401536.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_020401536.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
109943118

.
zma-u.5
for
109943118

.
zma-u.5
for
542368

.
zma-u.5
for
103642790

.
zma-u.5
for
103641723

.
osa-u.5
for
4336044

.
osa-u.5
for
4331495

.
ath-u.5
for
GAPB

.
ath-u.5
for
GAPA-2

.
ath-u.5
for
GAPA

.
gma-u.5
for
100815649

.
gma-u.5
for
732655

.
gma-u.5
for
732571

.
sly-u.5
for
101266713

.
sly-u.5
for
101264004

.
sly-u.5
for
101253541

.
vvi-u.5
for
100246378

.
vvi-u.5
for
100259814

.
ppo-u.5
for
7494712

.
ppo-u.5
for
7457998

.
mtr-u.5
for
11428156

.
mtr-u.5
for
11437530

.


Ortholog ID: 1864
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol GAPA GAPB LOC100815649 LOC100806482 LOC101266713 LOC101264004 LOC4336044 LOC4331495 LOC109943118 LOC542290 LOC103843097 LOC103875281 LOC100246378 LOC100259814 LOC7494712 LOC11428156 LOC11437530 LOC123045658 LOC123093580 LOC123426905 LOC123449789 LOC107922459 LOC107935841 LOC106412548 LOC106349325 CHLRE_01g010900v5 LOC110431784 LOC110436299 LOC102587206 LOC102606161 LOC102626680 LOC102614495 LOC100829538 LOC100846055 LOC107767301 LOC107780142
Function* glyceraldehyde 3-phosphate dehydrogenase A subunit glyceraldehyde-3-phosphate dehydrogenase B subunit glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde phosphate dehydrogenase B1 glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic uncharacterized protein glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 9
ath00710 Carbon fixation by Calvin cycle 8
ath00195 Photosynthesis 6
ath00010 Glycolysis / Gluconeogenesis 3
ath00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 14
ath00710 Carbon fixation by Calvin cycle 10
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00260 Glycine, serine and threonine metabolism 4
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 13
gma01200 Carbon metabolism 13
gma00030 Pentose phosphate pathway 4
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 11
gma01200 Carbon metabolism 11
gma00030 Pentose phosphate pathway 4
gma00010 Glycolysis / Gluconeogenesis 3
gma00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 12
sly00710 Carbon fixation by Calvin cycle 10
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00030 Pentose phosphate pathway 4
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 12
sly00710 Carbon fixation by Calvin cycle 10
sly00195 Photosynthesis 4
sly00030 Pentose phosphate pathway 4
sly01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00195 Photosynthesis 7
osa00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 10
osa00710 Carbon fixation by Calvin cycle 8
osa00195 Photosynthesis 5
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 7
zma01200 Carbon metabolism 7
zma00195 Photosynthesis 5
zma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 8
zma00710 Carbon fixation by Calvin cycle 7
zma01200 Carbon metabolism 7
zma00195 Photosynthesis 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00710 Carbon fixation by Calvin cycle 5
bra01230 Biosynthesis of amino acids 3
bra00195 Photosynthesis 2
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 5
bra00710 Carbon fixation by Calvin cycle 4
bra00195 Photosynthesis 3
bra01230 Biosynthesis of amino acids 3
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 12
vvi00710 Carbon fixation by Calvin cycle 10
vvi00630 Glyoxylate and dicarboxylate metabolism 4
vvi01230 Biosynthesis of amino acids 4
vvi00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 11
vvi00710 Carbon fixation by Calvin cycle 10
vvi00010 Glycolysis / Gluconeogenesis 4
vvi00195 Photosynthesis 3
vvi00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 10
ppo00710 Carbon fixation by Calvin cycle 7
ppo00010 Glycolysis / Gluconeogenesis 4
ppo01230 Biosynthesis of amino acids 3
ppo00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr00195 Photosynthesis 5
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00710 Carbon fixation by Calvin cycle 5
mtr00195 Photosynthesis 5
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 11
tae01200 Carbon metabolism 11
tae00195 Photosynthesis 6
tae00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 9
tae01200 Carbon metabolism 9
tae00480 Glutathione metabolism 2
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 6
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 6
hvu00195 Photosynthesis 5
hvu00710 Carbon fixation by Calvin cycle 4
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00710 Carbon fixation by Calvin cycle 6
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 8
bna00710 Carbon fixation by Calvin cycle 6
bna00260 Glycine, serine and threonine metabolism 2
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 3
bna01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 7
cre01200 Carbon metabolism 7
cre00195 Photosynthesis 4
cre00010 Glycolysis / Gluconeogenesis 3
cre00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 11
sbi00195 Photosynthesis 4
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 9
sbi00195 Photosynthesis 3
sbi00710 Carbon fixation by Calvin cycle 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 8
sot00710 Carbon fixation by Calvin cycle 7
sot00195 Photosynthesis 6
sot00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 8
cit01200 Carbon metabolism 4
cit00196 Photosynthesis - antenna proteins 3
cit00710 Carbon fixation by Calvin cycle 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 8
cit00630 Glyoxylate and dicarboxylate metabolism 4
cit01200 Carbon metabolism 4
cit00196 Photosynthesis - antenna proteins 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 7
bdi00195 Photosynthesis 5
bdi00710 Carbon fixation by Calvin cycle 5
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 8
bdi00710 Carbon fixation by Calvin cycle 7
bdi00195 Photosynthesis 4
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 11
nta00260 Glycine, serine and threonine metabolism 8
nta00710 Carbon fixation by Calvin cycle 7
nta00220 Arginine biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 10
nta01200 Carbon metabolism 10
nta00630 Glyoxylate and dicarboxylate metabolism 8
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822277 840895 100815649 100806482 101266713 101264004 4336044 4331495 109943118 542290 103843097 103875281 100246378 100259814 7494712 11428156 11437530 123045658 123093580 123426905 123449789 107922459 107935841 106412548 106349325 5715019 110431784 110436299 102587206 102606161 102626680 102614495 100829538 100846055 107767301 107780142
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