ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-r.6	541684	indeterminate spikelet 1
zma-u.5	541684	indeterminate spikelet 1
zma-m.5	541684	indeterminate spikelet 1
zma-u.5	100280414	uncharacterized LOC100280414
zma-u.5	100381947	uncharacterized LOC100381947
zma-u.5	103635944	APETALA2-like protein 1
sbi-r.1	8068151	ethylene-responsive transcription factor RAP2-7
sbi-r.1	8079577	AP2-like ethylene-responsive transcription factor TOE3
sbi-r.1	8078470	floral homeotic protein APETALA 2
osa-u.5	9271266	ethylene-responsive transcription factor RAP2-7
osa-u.5	9269072	AP2-like ethylene-responsive transcription factor TOE3
tae-r.2	123047120	APETALA2-like protein 5
tae-r.2	123054929	APETALA2-like protein 5
tae-r.2	123123462	APETALA2-like protein 2
hvu-r.1	123428148	APETALA2-like protein 5
hvu-r.1	123403691	APETALA2-like protein 1
hvu-r.1	123409793	APETALA2-like protein 4
bdi-r.1	100839861	floral homeotic protein APETALA 2
bdi-r.1	100834763	AP2-like ethylene-responsive transcription factor TOE3
bdi-r.1	100821738	floral homeotic protein APETALA 2
ath-u.5	TOE2	target of early activation tagged (EAT) 2
ath-u.5	TOE3	target of early activation tagged (EAT) 3
ath-u.5	AP2	Integrase-type DNA-binding superfamily protein
gma-u.5	100797238	APETALA2-like protein 3
gma-u.5	100794096	floral homeotic protein APETALA 2
gma-u.5	100801975	floral homeotic protein APETALA 2
sly-u.5	AP2e	APETALA2-like protein AP2e
sly-u.5	AP2a	APETALA2a
sly-u.5	AP2b	APETALA2-like protein AP2b
bra-r.6	103851522	AP2-like ethylene-responsive transcription factor TOE2
bra-r.6	103829531	AP2-like ethylene-responsive transcription factor TOE3
bra-r.6	103841411	AP2-like ethylene-responsive transcription factor SMZ
vvi-u.5	100246815	ethylene-responsive transcription factor RAP2-7
vvi-u.5	AP2	transcription factor APETALA2
ppo-u.5	18100239	APETALA2-like protein 3
ppo-u.5	7469774	APETALA2-like protein 3
ppo-u.5	7489618	APETALA2-like protein 3
mtr-u.5	11407832	floral homeotic protein APETALA 2
mtr-u.5	11406478	ethylene-responsive transcription factor RAP2-7
mtr-u.5	11417561	AP2-like ethylene-responsive transcription factor TOE3
ghi-r.1	107916610	floral homeotic protein APETALA 2
ghi-r.1	121214048	APETALA2-like protein 3
ghi-r.1	107945402	floral homeotic protein APETALA 2
bna-r.1	106437467	ethylene-responsive transcription factor RAP2-7
bna-r.1	106438341	ethylene-responsive transcription factor RAP2-7-like
bna-r.1	106439870	AP2-like ethylene-responsive transcription factor SMZ
sot-r.1	102589826	AP2-like ethylene-responsive transcription factor TOE3
sot-r.1	102605336	ethylene-responsive transcription factor RAP2-7-like
sot-r.1	102582568	floral homeotic protein APETALA 2
cit-r.1	102606994	ethylene-responsive transcription factor RAP2-7
cit-r.1	102621126	floral homeotic protein APETALA 2-like
cit-r.1	102621401	APETALA2-like protein 2
nta-r.1	107819773	ethylene-responsive transcription factor RAP2-7
nta-r.1	107764494	floral homeotic protein APETALA 2
nta-r.1	107778909	AP2-like ethylene-responsive transcription factor TOE3
cre-r.1	CHLRE_08g383000v5	uncharacterized protein
cre-r.1	CHLRE_01g009575v5	uncharacterized protein
cre-r.1	CHLRE_08g385350v5	uncharacterized protein

Top 50 coexpressed genes to 541684 (zma-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 541684 (zma-r.6 coexpression data)

CoexMap"541684"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1994 genes)

IEA

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1355 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2288 genes)	IEA

Protein

NP_001104904.2 [sequence] [blastp]
XP_008648069.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for NP_001104904.2)
nucl 4, mito 2, cyto 1, plas 1, cyto_mito 1, cyto_pero 1, E.R._plas 1	(predict for XP_008648069.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001104904.2)
other 7	(predict for XP_008648069.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-r.6 for 541684	zma-u.5 for 541684	zma-m.5 for 541684	zma-u.5 for 100280414	zma-u.5 for 100381947	zma-u.5 for 103635944	sbi-r.1 for 8068151	sbi-r.1 for 8079577	sbi-r.1 for 8078470	osa-u.5 for 9271266	osa-u.5 for 9269072	tae-r.2 for 123047120	tae-r.2 for 123054929	tae-r.2 for 123123462	hvu-r.1 for 123428148	hvu-r.1 for 123403691	hvu-r.1 for 123409793	bdi-r.1 for 100839861	bdi-r.1 for 100834763	bdi-r.1 for 100821738	ath-u.5 for TOE2	ath-u.5 for TOE3	ath-u.5 for AP2	gma-u.5 for 100797238	gma-u.5 for 100794096	gma-u.5 for 100801975	sly-u.5 for AP2e	sly-u.5 for AP2a	sly-u.5 for AP2b	bra-r.6 for 103851522	bra-r.6 for 103829531	bra-r.6 for 103841411	vvi-u.5 for 100246815	vvi-u.5 for AP2	ppo-u.5 for 18100239	ppo-u.5 for 7469774	ppo-u.5 for 7489618	mtr-u.5 for 11407832	mtr-u.5 for 11406478	mtr-u.5 for 11417561	ghi-r.1 for 107916610	ghi-r.1 for 121214048	ghi-r.1 for 107945402	bna-r.1 for 106437467	bna-r.1 for 106438341	bna-r.1 for 106439870	sot-r.1 for 102589826	sot-r.1 for 102605336	sot-r.1 for 102582568	cit-r.1 for 102606994	cit-r.1 for 102621126	cit-r.1 for 102621401	nta-r.1 for 107819773	nta-r.1 for 107764494	nta-r.1 for 107778909	cre-r.1 for CHLRE_08g383000v5	cre-r.1 for CHLRE_01g009575v5	cre-r.1 for CHLRE_08g385350v5

Ortholog

Ortholog ID: 395

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

TOE2

SMZ

SNZ

LOC100797238

LOC100788303

LOC100808212

AP2e

AP2c

AP2

Function^*

uncharacterized LOC100280414

sister of indeterminate spikelet 1

glossy15

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

APETALA2-like protein 3

APETALA2-like protein 2

APETALA2-like protein 1

APETALA2-like protein 5

APETALA2-like protein 4

APETALA2-like protein 2

floral homeotic protein APETALA 2

AP2/ERF and B3 domain-containing transcription factor ARF14-like

target of early activation tagged (EAT) 2

Integrase-type DNA-binding superfamily protein

APETALA2-like protein 3

ethylene-responsive transcription factor RAP2-7

APETALA2-like protein 3

APETALA2-like protein AP2e

APETALA2-like protein AP2c

ethylene-responsive transcription factor RAP2-7-like

AP2-like ethylene-responsive transcription factor TOE2

AP2-like ethylene-responsive transcription factor TOE3

AP2-like ethylene-responsive transcription factor TOE2

ethylene-responsive transcription factor RAP2-7

transcription factor APETALA2

APETALA2-like protein 3

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

AP2-like ethylene-responsive transcription factor TOE3

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

floral homeotic protein APETALA 2-like

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

ethylene-responsive transcription factor RAP2-7-like

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	4
zma00500	Starch and sucrose metabolism	2
zma01200	Carbon metabolism	2
zma01210	2-Oxocarboxylic acid metabolism	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4
sly00908	Zeatin biosynthesis	3
sly00996	Biosynthesis of various alkaloids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00030	Pentose phosphate pathway	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00920	Sulfur metabolism	9
ghi01320	Sulfur cycle	7
ghi00230	Purine metabolism	4
ghi00261	Monobactam biosynthesis	4
ghi00450	Selenocompound metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	2
sot03010	Ribosome	2
sot00785	Lipoic acid metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	2
cit00071	Fatty acid degradation	2
cit00350	Tyrosine metabolism	2
cit00620	Pyruvate metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00640	Propanoate metabolism	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	5
cit04146	Peroxisome	3
cit00071	Fatty acid degradation	2
cit01040	Biosynthesis of unsaturated fatty acids	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre02010	ABC transporters	2

Expression

Expression pattern

Entrez Gene ID^*

100280414

100271892

732805

8068151

8068364

8057377

9269072

4342787

123123462

543013

123428148

123409793

123453013

100839861

100831490

100825522

836134

824664

818510

100797238

100788303

100808212

100736535

100736534

101259280

103851522

103829531

103845425

100246815

100268051

18100239

7489618

7465291

11407832

11406478

11417561

107931690

107959062

107913226

125594129

106423299

106366778

102605336

102582568

102579807

102606994

102622542

102627474

107764494

107803429

107810888

5719829

5725844

5725812

The preparation time of this page was 0.1 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	2	3	3	3	3	3	3	3	2	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 541684 (zma-r.6 coexpression data)

Top 50 enrichment test to 541684 (zma-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**